RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GALNT5Q7Z7M9 940 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 AQP12AQ8IXF9 295 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 FAM120BQ96EK7 910 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 ZBED3Q96IU2 234 aaPredicted RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 CEP19Q96LK0 163 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 ASB2Q96Q27 587 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 CDK15Q96Q40 435 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 NOL6Q9H6R4 1146 aaKnown RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 HPS4Q9NQG7 708 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 ATAD3AQ9NVI7 634 aa12.56□□□□□ -0.4
LIG1-221ENST00000613670 PNMA8BQ9ULN7 279 aaPredicted RBP12.56□□□□□ -0.4
LIG1-221ENST00000613670 EVPLQ92817 2033 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 SH3PXD2BA1X283 911 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 FBP2O00757 339 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 NADKO95544 446 aaPredicted RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 GPIP06744 558 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 HOXA11P31270 313 aaPredicted RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 OR1G1P47890 313 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CCT8P50990 548 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 TECRLQ5HYJ1 363 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CLEC14AQ86T13 490 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CMTR2Q8IYT2 770 aaKnown RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 OR13C4Q8NGS5 318 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CLHC1Q8NHS4 586 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 HPS1Q92902 700 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 PSMG2Q969U7 264 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 MUS81Q96NY9 551 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 DPY30Q9C005 99 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 ROGDIQ9GZN7 287 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 NAA50Q9GZZ1 169 aaKnown RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 ABCC13Q9NSE7 274 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 WWOXQ9NZC7 414 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 POLG2Q9UHN1 485 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CDH9Q9ULB4 789 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 COL24A1Q17RW2 1714 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 C2orf81A6NN90 581 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 ENPP3O14638 875 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CYBBP04839 570 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 MMP3P08254 477 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 THRBP10828 461 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 IMPDH2P12268 514 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 SIM2Q14190 667 aaPredicted RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 SLC39A12Q504Y0 691 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 SLCO6A1Q86UG4 719 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 P3H2Q8IVL5 708 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 MAGED4Q96JG8 741 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CINPQ9BW66 212 aaPredicted RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 ASPSCR1Q9BZE9 553 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 GPR63Q9BZJ6 419 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 ABHD16BQ9H3Z7 469 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 PCDH12Q9NPG4 1184 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 ABCB10Q9NRK6 738 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 PGAP2Q9UHJ9 254 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 ARL5AQ9Y689 179 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 TRIM43BA6NCK2 446 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 MOXD2PA6NHM9 499 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 E9PAM4 449 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 J3KR12 359 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 STAU1O95793 577 aaKnown RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 GOT2P00505 430 aaKnown RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 SMPD1P17405 629 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 OXTRP30559 389 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 UFM1P61960 85 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 RPL38P63173 70 aaKnown RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 LAPTM5Q13571 262 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 DDR2Q16832 855 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 GLT6D1Q7Z4J2 308 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 HEATR4Q86WZ0 1026 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CPNE9Q8IYJ1 553 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 ABI1Q8IZP0 508 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 EID3Q8N140 333 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CENPSQ8N2Z9 138 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 ATG16L2Q8NAA4 619 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 OR10Q1Q8NGQ4 319 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 TOP1MTQ969P6 601 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 CYP2S1Q96SQ9 504 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 OLAHQ9NV23 265 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 EIF3LQ9Y262 564 aaKnown RBP12.55□□□□□ -0.4
LIG1-221ENST00000613670 INVSQ9Y283 1065 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 NME7Q9Y5B8 376 aa12.55□□□□□ -0.4
LIG1-221ENST00000613670 TYW5A2RUC4 315 aaKnown RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 G3V2T6 193 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 CBX4O00257 560 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 PDHXO00330 501 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 OR4F21O95013 312 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 ZNF135P52742 658 aaPredicted RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 HERVK_113P63132 956 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 LRP8Q14114 963 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 PGS1Q32NB8 556 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 PABPC1LQ4VXU2 614 aaKnown RBP12.54□□□□□ -0.4
LIG1-221ENST00000613670 GPRIN3Q6ZVF9 776 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 THAP5Q7Z6K1 395 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 TLK2Q86UE8 772 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 ATP6V0D2Q8N8Y2 350 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 OR4L1Q8NH43 312 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 PSMA8Q8TAA3 256 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 FBXO32Q969P5 355 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 HMCESQ96FZ2 354 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 C3orf30Q96M34 536 aa12.54□□□□□ -0.4
LIG1-221ENST00000613670 GLT1D1Q96MS3 346 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms