RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 NTSR1P30989 418 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 LSP1P33241 339 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 PFKPQ01813 784 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 POU4F1Q01851 419 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 TDGQ13569 410 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 ZNF460Q14592 562 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 CHRNA6Q15825 494 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 HECTD2Q5U5R9 776 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 KIAA1211LQ6NV74 962 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 SNX20Q7Z614 316 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 DSG4Q86SJ6 1040 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 SPNS2Q8IVW8 549 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 PLD6Q8N2A8 252 aaKnown RBP14.2□□□□□ -0.14
USP39-220ENST00000613444 GPATCH11Q8N954 259 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 ELMO2Q96JJ3 720 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 BIRC8Q96P09 236 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 PLEKHG4BQ96PX9 1271 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 C1QTNF1Q9BXJ1 281 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 HDAC8Q9BY41 377 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 CCDC134Q9H6E4 229 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 EMCNQ9ULC0 261 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 CORO1CQ9ULV4 474 aaPredicted RBP14.2□□□□□ -0.14
USP39-220ENST00000613444 MED16Q9Y2X0 877 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 SLC30A1Q9Y6M5 507 aa14.2□□□□□ -0.14
USP39-220ENST00000613444 A0A1W2PQF6 199 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 C1QTNF3-AMACRE9PGA6 284 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 PHGDHO43175 533 aaKnown RBP14.19□□□□□ -0.14
USP39-220ENST00000613444 NFKBIAP25963 317 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 DRD3P35462 400 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 PSMD8P48556 350 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 CCT5P48643 541 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 TTPAP49638 278 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 COPAP53621 1224 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 CDKN2DP55273 166 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 RAB10P61026 200 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 IRF9Q00978 393 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 SATB1Q01826 763 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 GRSF1Q12849 480 aaKnown RBP eCLIP14.19□□□□□ -0.14
USP39-220ENST00000613444 ARHGEF7Q14155 803 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 LVRNQ6Q4G3 990 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 LIPIQ6XZB0 460 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 ERN2Q76MJ5 926 aaKnown RBP14.19□□□□□ -0.14
USP39-220ENST00000613444 TECPR1Q7Z6L1 1165 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 CCDC97Q96F63 343 aaPredicted RBP14.19□□□□□ -0.14
USP39-220ENST00000613444 PPP1R16AQ96I34 528 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 CABS1Q96KC9 395 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 PRDM6Q9NQX0 595 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 VWA7Q9Y334 891 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 A6NNZ2 444 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 OR1I1O60431 355 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 STMN1P16949 149 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 UGT1A6P19224 532 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 SAT1P21673 171 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 UGT1A1P22309 533 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 UGT1A4P22310 534 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 XPAP23025 273 aaPredicted RBP14.19□□□□□ -0.14
USP39-220ENST00000613444 UGT1A3P35503 534 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 UGT1A5P35504 534 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 P2RY2P41231 377 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 ADARP55265 1226 aaKnown RBP14.19□□□□□ -0.14
USP39-220ENST00000613444 ILF2Q12905 390 aaKnown RBP14.19□□□□□ -0.14
USP39-220ENST00000613444 CCINQ13939 588 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 TERF2Q15554 542 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 DBN1Q16643 649 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 INSCQ1MX18 579 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 TUBB8Q3ZCM7 444 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 SLC44A4Q53GD3 710 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 PIP5KL1Q5T9C9 394 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 ERAP2Q6P179 960 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 FBXL19Q6PCT2 694 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 Q6ZVL8 140 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 AADATQ8N5Z0 425 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 FAM111AQ96PZ2 611 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 AARSD1Q9BTE6 412 aaKnown RBP14.19□□□□□ -0.14
USP39-220ENST00000613444 VPS11Q9H270 941 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 ASB8Q9H765 288 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 ZNF358Q9NW07 568 aa14.19□□□□□ -0.14
USP39-220ENST00000613444 NFKBIL1Q9UBC1 381 aaPredicted RBP14.19□□□□□ -0.14
USP39-220ENST00000613444 MTF2Q9Y483 593 aaPredicted RBP14.19□□□□□ -0.14
USP39-220ENST00000613444 TRPM6Q9BX84 2022 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 NUMA1Q14980 2115 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 GOLGA8CPA6NN73 597 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 H0Y858 1186 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 NDUFS3O75489 264 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 COL9A1P20849 921 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 FDXRP22570 491 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 SUOXP51687 545 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 DCDC1P59894 354 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 CNTN1Q12860 1018 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 CST6Q15828 149 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 PUS10Q3MIT2 529 aaKnown RBP14.18□□□□□ -0.14
USP39-220ENST00000613444 SETMARQ53H47 684 aaPredicted RBP14.18□□□□□ -0.14
USP39-220ENST00000613444 AARS2Q5JTZ9 985 aaKnown RBP14.18□□□□□ -0.14
USP39-220ENST00000613444 RNF187Q5TA31 235 aaPredicted RBP14.18□□□□□ -0.14
USP39-220ENST00000613444 ZDHHC20Q5W0Z9 365 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 CERS6Q6ZMG9 384 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 SERPINA9Q86WD7 417 aa14.18□□□□□ -0.14
USP39-220ENST00000613444 CENPLQ8N0S6 344 aaPredicted RBP14.18□□□□□ -0.14
USP39-220ENST00000613444 TXNDC5Q8NBS9 432 aaKnown RBP14.18□□□□□ -0.14
USP39-220ENST00000613444 GDAP1Q8TB36 358 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms