RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 HOXC4P09017 264 aaPredicted RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 F8A1P23610 371 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 CD82P27701 267 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 IL1R2P27930 398 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 GRNP28799 593 aaKnown RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 GPR1P46091 355 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 POLR2LP62875 67 aaKnown RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 UBXN1Q04323 297 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 DPYSQ14117 519 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 NR1D2Q14995 579 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 TSR1Q2NL82 804 aaKnown RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 ZNF648Q5T619 568 aaPredicted RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 ERMARDQ5T6L9 678 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 TMCO4Q5TGY1 634 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 E4F1Q66K89 784 aaPredicted RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 SMYD5Q6GMV2 418 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 TMEM135Q86UB9 458 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 BMPERQ8N8U9 685 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 AGBL5Q8NDL9 886 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 OR4D9Q8NGE8 314 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 ENOX1Q8TC92 643 aaKnown RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 HSPH1Q92598 858 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 RTP4Q96DX8 246 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 PSKH2Q96QS6 385 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 ABCG8Q9H221 673 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 ZWILCHQ9H900 591 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 TRNAU1APQ9NX07 287 aaKnown RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 PILRAQ9UKJ1 303 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 SLC17A4Q9Y2C5 497 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 PCDHGA3Q9Y5H0 932 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 OAS3Q9Y6K5 1087 aaKnown RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 TNRC6AQ8NDV7 1962 aaKnown RBP8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 LGALS16A8MUM7 142 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 PDE2AO00408 941 aaPredicted RBP8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 MTSS1O43312 755 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 MAFKO60675 156 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 LRCH4O75427 683 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 ASMTLO95671 621 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 FURINP09958 794 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 ATP1A3P13637 1013 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 ZNF28P17035 718 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 MLLT10P55197 1068 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 AP1S1P61966 158 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 NSUN2Q08J23 767 aaKnown RBP eCLIP8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 DCAF12Q5T6F0 453 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 LRRC66Q68CR7 880 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 TMEM71Q6P5X7 295 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 CHST15Q7LFX5 561 aaPredicted RBP8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 IRF2BP2Q7Z5L9 587 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 TECPR1Q7Z6L1 1165 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 CPNE8Q86YQ8 564 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 CBARPQ8N350 705 aaPredicted RBP8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 NCSTNQ92542 709 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 AP2M1Q96CW1 435 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 ABHD17AQ96GS6 310 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 ELMO2Q96JJ3 720 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 BTBD6Q96KE9 485 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 OR2M4Q96R27 311 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 NUDCD1Q96RS6 583 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 SLC38A3Q99624 504 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 SYT11Q9BT88 431 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 RIOK2Q9BVS4 552 aaKnown RBP8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 TBC1D10AQ9BXI6 508 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 GPN2Q9H9Y4 310 aaPredicted RBP8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 NT5MQ9NPB1 228 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 MYO1AQ9UBC5 1043 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 TBC1D29Q9UFV1 150 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 KCNK6Q9Y257 313 aa8.59□□□□□ -1.03
SHKBP1-220ENST00000599716 MED13Q9UHV7 2174 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 TMEM191CA6NGB0 347 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 ZNF891A8MT65 544 aaPredicted RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 PRPSAP2O60256 369 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 STK17BO94768 372 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 PGLSO95336 258 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 IVLP07476 585 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 ACP5P13686 325 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 CASRP41180 1078 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 GPR3P46089 330 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 AIF1P55008 147 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 GFERP55789 205 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 DSC2Q02487 901 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 PTSQ03393 145 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 ITKQ08881 620 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 CDC20Q12834 499 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 MMRN1Q13201 1228 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 RFTN1Q14699 578 aaPredicted RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 PYCR3Q53H96 274 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 ZNF787Q6DD87 383 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 PLEKHA7Q6IQ23 1121 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 APTXQ7Z2E3 356 aaKnown RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 KDELC2Q7Z4H8 507 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 ZC3H18Q86VM9 953 aaKnown RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 GALNT13Q8IUC8 556 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 NLGN4XQ8N0W4 816 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 NLGN4YQ8NFZ3 816 aaPredicted RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 C9orf43Q8TAL5 461 aaPredicted RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 PIH1D2Q8WWB5 315 aa8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 NANOS1Q8WY41 292 aaKnown RBP8.58□□□□□ -1.04
SHKBP1-220ENST00000599716 STARD8Q92502 1023 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms