RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CCNI2Q6ZMN8 369 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-213ENST00000598355 KDELC2Q7Z4H8 507 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 SLC13A5Q86YT5 568 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-213ENST00000598355 CACTIN-AS1Q8N1I8 211 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 GALNT15Q8N3T1 639 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 GPR26Q8NDV2 337 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 PTCD2Q8WV60 388 aaKnown RBP16.05■□□□□ 0.16
TRIM28-213ENST00000598355 TLR10Q9BXR5 811 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 FRMD8P1Q9BZ68 369 aaPredicted RBP16.05■□□□□ 0.16
TRIM28-213ENST00000598355 TRABDQ9H4I3 376 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 TRNAU1APQ9NX07 287 aaKnown RBP16.05■□□□□ 0.16
TRIM28-213ENST00000598355 HACD3Q9P035 362 aa16.05■□□□□ 0.16
TRIM28-213ENST00000598355 AURKAO14965 403 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 STK10O94804 968 aaKnown RBP16.04■□□□□ 0.16
TRIM28-213ENST00000598355 ANXA6P08133 673 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 GDF10P55107 478 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 DAB2P98082 770 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 MSLNQ13421 630 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-213ENST00000598355 RPS6KA1Q15418 735 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 SIX1Q15475 284 aaPredicted RBP16.04■□□□□ 0.16
TRIM28-213ENST00000598355 KCTD11Q693B1 232 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 TMPRSS12Q86WS5 348 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 IPMKQ8NFU5 416 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 CCDC110Q8TBZ0 833 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 DTX3LQ8TDB6 740 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 GPBAR1Q8TDU6 330 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 HIC2Q96JB3 615 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 CNTNAP3BQ96NU0 1288 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 PPP1R2P1Q96PQ5 205 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 PLEKHG4BQ96PX9 1271 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 CNTNAP3Q9BZ76 1288 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 TMEM168Q9H0V1 697 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 KCNF1Q9H3M0 494 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 FAM83DQ9H4H8 585 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 CYP4F12Q9HCS2 524 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 RAD18Q9NS91 495 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 VPS18Q9P253 973 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 SHOC2Q9UQ13 582 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 ST14Q9Y5Y6 855 aa16.04■□□□□ 0.16
TRIM28-213ENST00000598355 APC2O95996 2303 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 ACACAQ13085 2346 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 UNC13CQ8NB66 2214 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 GOLGA6CA6NDK9 693 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 GOLGA6BA6NDN3 693 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 F5H423 210 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-213ENST00000598355 LIASO43766 372 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 GOLGA6DP0CG33 693 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 CTSEP14091 401 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 BPIP17213 487 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 DUSP3P51452 185 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-213ENST00000598355 CAMK2BQ13554 666 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 CCDC70Q6NSX1 233 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 GUSBP11Q6P575 273 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 OGFOD3Q6PK18 319 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 UNQ6494/PRO21346Q6UXR6 183 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 RD3Q7Z3Z2 195 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 GKN2Q86XP6 184 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 NRROSQ86YC3 692 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 TRAM1L1Q8N609 369 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 ARL10Q8N8L6 244 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 GPR156Q8NFN8 814 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 ZSCAN5AQ9BUG6 496 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 FSD1LQ9BXM9 530 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 GPR63Q9BZJ6 419 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 CARS2Q9HA77 564 aaKnown RBP16.03■□□□□ 0.16
TRIM28-213ENST00000598355 ARNT2Q9HBZ2 717 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 EVA1BQ9NVM1 165 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 GOLGA6AQ9NYA3 693 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 IL17CQ9P0M4 197 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 SUFUQ9UMX1 484 aa16.03■□□□□ 0.16
TRIM28-213ENST00000598355 AAR2Q9Y312 384 aaKnown RBP16.03■□□□□ 0.16
TRIM28-213ENST00000598355 OAS3Q9Y6K5 1087 aaKnown RBP16.03■□□□□ 0.16
TRIM28-213ENST00000598355 KMT2BQ9UMN6 2715 aaPredicted RBP16.03■□□□□ 0.16
TRIM28-213ENST00000598355 DMXL2Q8TDJ6 3036 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 DNAJC6O75061 913 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 CAPNS1P04632 268 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 E2F1Q01094 437 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 INSM1Q01101 510 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-213ENST00000598355 NR0B2Q15466 257 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 CDCP2Q5VXM1 449 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 DENND5AQ6IQ26 1287 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 TRIM74Q86UV6 250 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 C17orf82Q86X59 251 aaPredicted RBP16.02■□□□□ 0.16
TRIM28-213ENST00000598355 FAM71DQ8N9W8 422 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 KYQ8NBH2 561 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 CCL4L1Q8NHW4 92 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 ATG4AQ8WYN0 398 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 NAT6Q93015 286 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 C19orf43Q9BQ61 176 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 TMEM121Q9BTD3 319 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 FICDQ9BVA6 458 aa16.02■□□□□ 0.16
TRIM28-213ENST00000598355 KIF26BQ2KJY2 2108 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 GAPDHSO14556 408 aaPredicted RBP16.01■□□□□ 0.15
TRIM28-213ENST00000598355 NOBOXO60393 691 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 AGTP01019 485 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 MYF5P13349 255 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 POLD2P49005 469 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 OLIG2Q13516 323 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 PARP6Q2NL67 630 aa16.01■□□□□ 0.15
TRIM28-213ENST00000598355 P3H1Q32P28 736 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms