RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	OR4D9	Q8NGE8	314 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	SLC37A2	Q8TED4	501 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	MAML1	Q92585	1016 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	ART4	Q93070	314 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	RIOK2	Q9BVS4	552 aa	Known RBP	10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	POLR1E	Q9GZS1	481 aa	Known RBP	10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	ZMYND15	Q9H091	742 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	KCNK4	Q9NYG8	393 aa		10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	RCOR3	Q9P2K3	495 aa	Predicted RBP	10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	OAS3	Q9Y6K5	1087 aa	Known RBP	10.47	□□□□□ -0.73
LSM4-205	ENST00000597776	SDK2	Q58EX2	2172 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	STMND1	H3BQB6	276 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	MYO1F	O00160	1098 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	MATN3	O15232	486 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	ZW10	O43264	779 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	CLDN7	O95471	211 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	ASMTL	O95671	621 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	PRL	P01236	227 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	ATP1A1	P05023	1023 aa	Known RBP	10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	SERPING1	P05155	500 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	THRA	P10827	490 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	ITGB6	P18564	788 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	CD82	P27701	267 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	PBX1	P40424	430 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	PPM1F	P49593	454 aa	Predicted RBP	10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	GBE1	Q04446	702 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	NIPAL4	Q0D2K0	466 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	CLCA4	Q14CN2	919 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	PAFAH1B3	Q15102	231 aa	Known RBP	10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	NFKBIB	Q15653	356 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	CLPP	Q16740	277 aa	Predicted RBP	10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	CCDC122	Q5T0U0	273 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	FAM182A	Q5T1J6	154 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	ALG1L	Q6GMV1	187 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	ZNF765	Q7L2R6	523 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	FAM129C	Q86XR2	697 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	LRRC49	Q8IUZ0	686 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	NDUFAF2	Q8N183	169 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	ZSCAN1	Q8NBB4	408 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	AGBL5	Q8NDL9	886 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	LPCAT1	Q8NF37	534 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	ARRDC2	Q8TBH0	407 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	FAM71B	Q8TC56	605 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	CPLX3	Q8WVH0	158 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	NKD1	Q969G9	470 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	COX14	Q96I36	57 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	TAAR9	Q96RI9	348 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	FUCA2	Q9BTY2	467 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	TDRD1	Q9BXT4	1180 aa	Known RBP	10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	FAM117A	Q9C073	453 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	CLMP	Q9H6B4	373 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	STARD5	Q9NSY2	213 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	RBM22	Q9NW64	420 aa	Known RBP eCLIP	10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	OCIAD1	Q9NX40	245 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	ZNHIT2	Q9UHR6	403 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	HEMK1	Q9Y5R4	338 aa	Predicted RBP	10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	B3GALT1	Q9Y5Z6	326 aa		10.46	□□□□□ -0.73
LSM4-205	ENST00000597776	BZW2	Q9Y6E2	419 aa	Known RBP	10.46	□□□□□ -0.73
LSM4-205	ENST00000597776		A0A1W2PQJ5	194 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	FADS2P1	A8MWK0	482 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	WISP1	O95388	367 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	HLA-DQB2	P05538	268 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	ZNF30	P17039	623 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	CSTF2	P33240	577 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	TAS2R40	P59535	323 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	FANCC	Q00597	558 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	KCNC4	Q03721	635 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	NFATC2	Q13469	925 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	SQSTM1	Q13501	440 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	TRA2A	Q13595	282 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	PEX6	Q13608	980 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	IFI16	Q16666	785 aa	Known RBP	10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	HADH	Q16836	314 aa	Known RBP	10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	ANKRD20A8P	Q5CZ79	823 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	SNAP47	Q5SQN1	464 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	TIGD7	Q6NT04	549 aa	Predicted RBP	10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	ALKBH5	Q6P6C2	394 aa	Known RBP	10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	LUZP1	Q86V48	1076 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	NRSN1	Q8IZ57	195 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	SFRP1	Q8N474	314 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	KCTD6	Q8NC69	237 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	EXD1	Q8NHP7	514 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	ZNF564	Q8TBZ8	553 aa	Predicted RBP	10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	SYN2	Q92777	582 aa	Predicted RBP	10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	WDR24	Q96S15	920 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	SLC38A3	Q99624	504 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	B3GNT4	Q9C0J1	378 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	CBX8	Q9HC52	389 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	SLC39A1	Q9NY26	324 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	TBC1D29	Q9UFV1	150 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	CNOT6	Q9ULM6	557 aa	Known RBP	10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	KCNK6	Q9Y257	313 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	PCDHGA3	Q9Y5H0	932 aa		10.45	□□□□□ -0.74
LSM4-205	ENST00000597776	C1orf232	A0A0U1RR37	186 aa		10.44	□□□□□ -0.74
LSM4-205	ENST00000597776	EFCAB7	A8K855	629 aa		10.44	□□□□□ -0.74
LSM4-205	ENST00000597776		A8MU76	341 aa		10.44	□□□□□ -0.74
LSM4-205	ENST00000597776	SNX2	O60749	519 aa		10.44	□□□□□ -0.74
LSM4-205	ENST00000597776	DNAJC6	O75061	913 aa		10.44	□□□□□ -0.74
LSM4-205	ENST00000597776	PYGL	P06737	847 aa		10.44	□□□□□ -0.74

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