RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PTPRCP08575 1304 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 ERI2A8K979 691 aaKnown RBP2.78□□□□□ -1.96
VPS35-207ENST00000568191 TAF4O00268 1085 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 CLIC2O15247 247 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 EGFP01133 1207 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 FAM106CPP0CH98 169 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 EDN2P20800 178 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 CCT5P48643 541 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 NR0B1P51843 470 aaKnown RBP2.78□□□□□ -1.96
VPS35-207ENST00000568191 MLLT10P55197 1068 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 PLIN5Q00G26 463 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 TLE2Q04725 743 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 NEXNQ0ZGT2 675 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 TRPC3Q13507 836 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 DCTN2Q13561 401 aaKnown RBP2.78□□□□□ -1.96
VPS35-207ENST00000568191 DRAP1Q14919 205 aaPredicted RBP2.78□□□□□ -1.96
VPS35-207ENST00000568191 C2orf68Q2NKX9 166 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 C6orf141Q5SZD1 244 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 DGLUCYQ7Z3D6 616 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 CPOQ8IVL8 374 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 CIARTQ8N365 385 aaPredicted RBP2.78□□□□□ -1.96
VPS35-207ENST00000568191 DBF4BQ8NFT6 615 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 THAP6Q8TBB0 222 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 TAS1R2Q8TE23 839 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 KLHL29Q96CT2 875 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 KLHL15Q96M94 604 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 SCLT1Q96NL6 688 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 HEMGNQ9BXL5 484 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 HCFC1R1Q9NWW0 138 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 KCND2Q9NZV8 630 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 SLC25A10Q9UBX3 287 aaPredicted RBP2.78□□□□□ -1.96
VPS35-207ENST00000568191 TBX20Q9UMR3 447 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 DLGAP4Q9Y2H0 992 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 OR2W1Q9Y3N9 320 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 CEPT1Q9Y6K0 416 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 SCINQ9Y6U3 715 aa2.78□□□□□ -1.96
VPS35-207ENST00000568191 SMIM1B2RUZ4 78 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 EIF3CLB5ME19 914 aaKnown RBP2.77□□□□□ -1.97
VPS35-207ENST00000568191 EIF3FO00303 357 aaPredicted RBP2.77□□□□□ -1.97
VPS35-207ENST00000568191 NCAM2O15394 837 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 BUD23O43709 281 aaKnown RBP2.77□□□□□ -1.97
VPS35-207ENST00000568191 IGHV4-39P01824 125 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 NR2F2P24468 414 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 ALDH4A1P30038 563 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 CHRNB4P30926 498 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 CDAP32320 146 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 CTCFP49711 727 aaPredicted RBP2.77□□□□□ -1.97
VPS35-207ENST00000568191 KRTAP10-5P60370 271 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 ISL1P61371 349 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 MAD2L1Q13257 205 aaPredicted RBP2.77□□□□□ -1.97
VPS35-207ENST00000568191 FCN2Q15485 313 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 SLC1A5Q15758 541 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 OR7E24Q6IFN5 339 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 FAM171BQ6P995 826 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 BRAT1Q6PJG6 821 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 ATF7IPQ6VMQ6 1270 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 PCDH20Q8N6Y1 951 aaKnown RBP2.77□□□□□ -1.97
VPS35-207ENST00000568191 STPG4Q8N801 248 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 ADAD2Q8NCV1 583 aaKnown RBP2.77□□□□□ -1.97
VPS35-207ENST00000568191 ZNF501Q96CX3 271 aaPredicted RBP2.77□□□□□ -1.97
VPS35-207ENST00000568191 ALG14Q96F25 216 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 C17orf77Q96MU5 243 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 TMEM47Q9BQJ4 181 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 PCGF1Q9BSM1 259 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 FUZQ9BT04 418 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 SIL1Q9H173 461 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 MMP25Q9NPA2 562 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 HSPB7Q9UBY9 170 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 FBXL2Q9UKC9 423 aa2.77□□□□□ -1.97
VPS35-207ENST00000568191 IGKV3D-20A0A0C4DH25 116 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 IFRD1O00458 451 aaPredicted RBP2.76□□□□□ -1.97
VPS35-207ENST00000568191 PSMD14O00487 310 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 TBX6O95947 436 aaPredicted RBP2.76□□□□□ -1.97
VPS35-207ENST00000568191 ZNF883P0CG24 379 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 CNTFP26441 200 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 HOXC9P31274 260 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 ABCD1P33897 745 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 AHRP35869 848 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 CPOXP36551 454 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 CCR5P51681 352 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 EIF3BP55884 814 aaKnown RBP2.76□□□□□ -1.97
VPS35-207ENST00000568191 TAS2R38P59533 333 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 PQLC2Q6ZP29 291 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 STXBP4Q6ZWJ1 553 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 HAPLN4Q86UW8 402 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 LRRTM4Q86VH4 590 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 MAP7D3Q8IWC1 876 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 ANKRD42Q8N9B4 389 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 KLHDC9Q8NEP7 349 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 OR2AK2Q8NG84 335 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 PPP4R1Q8TF05 950 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 HERVK_113Q902F9 699 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 TAAR8Q969N4 342 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 GCC1Q96CN9 775 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 LINGO1Q96FE5 620 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 ABHD8Q96I13 439 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 APOPT1Q96IL0 206 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 MAELQ96JY0 434 aaKnown RBP2.76□□□□□ -1.97
VPS35-207ENST00000568191 TMEM68Q96MH6 324 aa2.76□□□□□ -1.97
VPS35-207ENST00000568191 MPHOSPH8Q99549 860 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms