RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SMYD2Q9NRG4 433 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 RAD18Q9NS91 495 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 C20orf96Q9NUD7 363 aaPredicted RBP16.51■□□□□ 0.23
VPS4A-202ENST00000562754 MOCS1Q9NZB8 636 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 MARCH4Q9P2E8 410 aaPredicted RBP16.51■□□□□ 0.23
VPS4A-202ENST00000562754 SLC17A6Q9P2U8 582 aa16.51■□□□□ 0.23
VPS4A-202ENST00000562754 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.51■□□□□ 0.23
VPS4A-202ENST00000562754 TNRC6BQ9UPQ9 1833 aaKnown RBP16.5■□□□□ 0.23
VPS4A-202ENST00000562754 THADAQ6YHU6 1953 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 FADS2P1A8MWK0 482 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SLC31A1O15431 190 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 ERLIN1O75477 346 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SPAG6O75602 509 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SRP72O76094 671 aaKnown RBP16.5■□□□□ 0.23
VPS4A-202ENST00000562754 ABHD2P08910 425 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 ERVK-10P10266 1014 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 IGFALSP35858 605 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 PTPN5P54829 565 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 RPL6Q02878 288 aaKnown RBP16.5■□□□□ 0.23
VPS4A-202ENST00000562754 DPTQ07507 201 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SGCGQ13326 291 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SEMA3AQ14563 771 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 EFTUD2Q15029 972 aaKnown RBP eCLIP16.5■□□□□ 0.23
VPS4A-202ENST00000562754 ZNF528Q3MIS6 628 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SETMARQ53H47 684 aaPredicted RBP16.5■□□□□ 0.23
VPS4A-202ENST00000562754 BEND6Q5SZJ8 279 aaPredicted RBP16.5■□□□□ 0.23
VPS4A-202ENST00000562754 FBXO38Q6PIJ6 1188 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SLC36A4Q6YBV0 504 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 PTAR1Q7Z6K3 402 aaPredicted RBP16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SLC41A1Q8IVJ1 513 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 PIANPQ8IYJ0 282 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 MREGQ8N565 214 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 TRAM1L1Q8N609 369 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 PNPLA1Q8N8W4 532 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 PLA2G15Q8NCC3 412 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 UHMK1Q8TAS1 419 aaKnown RBP16.5■□□□□ 0.23
VPS4A-202ENST00000562754 FBF1Q8TES7 1133 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 GAB3Q8WWW8 586 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 CENPTQ96BT3 561 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SGSM3Q96HU1 749 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 MYOCQ99972 504 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 ORAI3Q9BRQ5 295 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SPATA16Q9BXB7 569 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 FUT8Q9BYC5 575 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 FAM126AQ9BYI3 521 aaPredicted RBP16.5■□□□□ 0.23
VPS4A-202ENST00000562754 CDH19Q9H159 772 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 FAM96AQ9H5X1 160 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 TMPRSS11EQ9UL52 423 aa16.5■□□□□ 0.23
VPS4A-202ENST00000562754 SPAG17Q6Q759 2223 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 METTL12A8MUP2 240 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 GALR2O43603 387 aaPredicted RBP16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UGT1A9O60656 530 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 PIAS1O75925 651 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 PCCBP05166 539 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 F7P08709 466 aaPredicted RBP16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UGT1A6P19224 532 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UGT1A1P22309 533 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UGT1A4P22310 534 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UGT1A3P35503 534 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UGT1A5P35504 534 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 HSD17B3P37058 310 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 CDKN1CP49918 316 aaPredicted RBP16.49■□□□□ 0.23
VPS4A-202ENST00000562754 NFATC2Q13469 925 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 LRRC14Q15048 493 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 ATP13A5Q4VNC0 1218 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 HSP90AA5PQ58FG0 334 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 ZRANB3Q5FWF4 1079 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 PDPK2PQ6A1A2 396 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 PSAPL1Q6NUJ1 521 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 FANCMQ8IYD8 2048 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 CADM4Q8NFZ8 388 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 OR4L1Q8NH43 312 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 DTX3LQ8TDB6 740 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 HNRNPLLQ8WVV9 542 aaKnown RBP16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UBLCP1Q8WVY7 318 aaPredicted RBP16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UGT1A7Q9HAW7 530 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UGT1A10Q9HAW8 530 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 UGT1A8Q9HAW9 530 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 CATSPERZQ9NTU4 200 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 KCTD5Q9NXV2 234 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 APPL1Q9UKG1 709 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 CA5BQ9Y2D0 317 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 SLCO1B1Q9Y6L6 691 aa16.49■□□□□ 0.23
VPS4A-202ENST00000562754 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 TRBV5-4A0A0C4DH59 114 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 FAM159BA6NKW6 160 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 AGAP14A8MT82 685 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 CXorf49A8MYA2 514 aaPredicted RBP16.48■□□□□ 0.23
VPS4A-202ENST00000562754 MAP3K13O43283 966 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 HRO43593 1189 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 ITGALP20701 1170 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 STX2P32856 288 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 PHBP35232 272 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 CACNG1Q06432 222 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 MGAT5Q09328 741 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 SLC29A2Q14542 456 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 ZNF470Q6ECI4 717 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 RAET1GQ6H3X3 334 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 NEPROQ6NW34 567 aa16.48■□□□□ 0.23
VPS4A-202ENST00000562754 SNX20Q7Z614 316 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms