RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 UGT1A6P19224 532 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 UGT1A1P22309 533 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 UGT1A4P22310 534 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 UGT1A3P35503 534 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 UGT1A5P35504 534 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 SPAM1P38567 509 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 DLG1Q12959 904 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 NFATC2Q13469 925 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 ELAVL3Q14576 367 aaKnown RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 SKIV2LQ15477 1246 aaKnown RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 CHRNA6Q15825 494 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 PREPLQ4J6C6 727 aaPredicted RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 AARS2Q5JTZ9 985 aaKnown RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 PARS2Q7L3T8 475 aaKnown RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 NXNL1Q96CM4 212 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 TSNARE1Q96NA8 513 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 FAM129BQ96TA1 746 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 AARSD1Q9BTE6 412 aaKnown RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 APPL1Q9UKG1 709 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 KCNA4P22459 653 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 WASP42768 502 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 TIAL1Q01085 375 aaKnown RBP eCLIP21.17■□□□□ 0.98
CLN3-209ENST00000561689 ARHGEF7Q14155 803 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 CCDC153Q494R4 210 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 NUDT18Q6ZVK8 323 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 CBARPQ8N350 705 aaPredicted RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 PIP4K2CQ8TBX8 421 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 SCG3Q8WXD2 468 aaKnown RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 P2RY13Q9BPV8 354 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 ELAC2Q9BQ52 826 aaKnown RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 C19orf43Q9BQ61 176 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 PITPNM3Q9BZ71 974 aa21.17■□□□□ 0.98
CLN3-209ENST00000561689 CPSF2Q9P2I0 782 aaKnown RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 CORO1CQ9ULV4 474 aaPredicted RBP21.17■□□□□ 0.98
CLN3-209ENST00000561689 A0A087X1B8 175 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 PFDN6O15212 129 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 IL1BP01584 269 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 CYP2A6P11509 494 aaPredicted RBP21.16■□□□□ 0.98
CLN3-209ENST00000561689 COL6A2P12110 1019 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 FDXRP22570 491 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 VIPR1P32241 457 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 SEC13P55735 322 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 CSHL1Q14406 222 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 RNF187Q5TA31 235 aaPredicted RBP21.16■□□□□ 0.98
CLN3-209ENST00000561689 TXNDC11Q6PKC3 985 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 TMEM207Q6UWW9 146 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 SNX20Q7Z614 316 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 TBC1D1Q86TI0 1168 aaPredicted RBP21.16■□□□□ 0.98
CLN3-209ENST00000561689 BIRC8Q96P09 236 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 NSRP1Q9H0G5 558 aaKnown RBP21.16■□□□□ 0.98
CLN3-209ENST00000561689 CCDC68Q9H2F9 335 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 SIRPGQ9P1W8 387 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 LIMD1Q9UGP4 676 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 CD84Q9UIB8 345 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 VPS9D1Q9Y2B5 631 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 KIAA1549LQ6ZVL6 1849 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 KLHL2O95198 593 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 ITGALP20701 1170 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 ALDH3A1P30838 453 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 CHI3L2Q15782 390 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 HSD11B1LQ7Z5J1 315 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 SERPINA9Q86WD7 417 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 MMAAQ8IVH4 418 aaKnown RBP21.16■□□□□ 0.98
CLN3-209ENST00000561689 CHPFQ8IZ52 775 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 TMIEQ8NEW7 156 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 ZNF398Q8TD17 642 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 HCAR2Q8TDS4 363 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 ANKRD49Q8WVL7 239 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 PPM1EQ8WY54 764 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 TBRG4Q969Z0 631 aaKnown RBP eCLIP21.16■□□□□ 0.98
CLN3-209ENST00000561689 CCDC97Q96F63 343 aaPredicted RBP21.16■□□□□ 0.98
CLN3-209ENST00000561689 SCYL1Q96KG9 808 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 GPR78Q96P69 363 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 UBE2ZQ9H832 354 aaPredicted RBP21.16■□□□□ 0.98
CLN3-209ENST00000561689 PRSS16Q9NQE7 514 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 COPG2Q9UBF2 871 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 ITM2BQ9Y287 266 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 STON1Q9Y6Q2 735 aa21.16■□□□□ 0.98
CLN3-209ENST00000561689 PLK4O00444 970 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 BIRC5O15392 142 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 CCDC166P0CW27 439 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 SPINT3P49223 89 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 PCLAFQ15004 111 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 DBN1Q16643 649 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 CES4AQ5XG92 561 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 C10orf107Q8IVU9 208 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 NAT14Q8WUY8 206 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 HEXDCQ8WVB3 486 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 EZH1Q92800 747 aaPredicted RBP21.15■□□□□ 0.98
CLN3-209ENST00000561689 ARRDC3Q96B67 414 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 IGSF5Q9NSI5 407 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.15■□□□□ 0.98
CLN3-209ENST00000561689 FAM50BQ9Y247 325 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 MED16Q9Y2X0 877 aa21.15■□□□□ 0.98
CLN3-209ENST00000561689 K7EQS6 105 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 TK2O00142 265 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 RHOBTB1O94844 696 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 CPA3P15088 417 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 PTGER3P43115 390 aa21.14■□□□□ 0.98
CLN3-209ENST00000561689 MLLT1Q03111 559 aaPredicted RBP21.14■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms