RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SLC44A4Q53GD3 710 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 TSTD2Q5T7W7 516 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ATG16L1Q676U5 607 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 LILRA6Q6PI73 481 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PACS1Q6VY07 963 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 RPS27LQ71UM5 84 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SIDT2Q8NBJ9 832 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CENPIQ92674 756 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CXorf40BQ96DE9 158 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SLC39A13Q96H72 371 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 AHCYL2Q96HN2 611 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CDKN2AIPNLQ96HQ2 116 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PSKH2Q96QS6 385 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 FCRL5Q96RD9 977 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 TTLL2Q9BWV7 592 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PLA2G2FQ9BZM2 168 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 FOXP3Q9BZS1 431 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 XPR1Q9UBH6 696 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 MUTYHQ9UIF7 546 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 RLFQ13129 1914 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 MAGEB16A2A368 324 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 B4DGG1 531 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SMAPO00193 183 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PRMT5O14744 637 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 WNT9AO14904 365 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 C2P06681 752 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CTHP32929 405 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CD68P34810 354 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PREPP48147 710 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 C21orf59P57076 290 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 TAS2R39P59534 338 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 IL2P60568 153 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SLC7A9P82251 487 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ZXDBP98169 803 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CNTN1Q12860 1018 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CAMK2GQ13555 558 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 RBM20Q5T481 1227 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF776Q68DI1 518 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 TXNDC11Q6PKC3 985 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 AFTPHQ6ULP2 937 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 IFNEQ86WN2 208 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 CCNJLQ8IV13 435 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 MFSD6LQ8IWD5 586 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PCDH20Q8N6Y1 951 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 LMNTD1Q8N9Z9 388 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 FAM46DQ8NEK8 389 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 FIBINQ8TAL6 211 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 E2F7Q96AV8 911 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF707Q96C28 371 aaPredicted RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 TRMT2BQ96GJ1 504 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 C1orf74Q96LT6 269 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PHOX2BQ99453 314 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 TSSK1BQ9BXA7 367 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 C1QTNF7Q9BXJ2 289 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 TRIM55Q9BYV6 548 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 DRC3Q9H069 523 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 PRDM16Q9HAZ2 1276 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 FBRSL1Q9HCM7 1045 aaKnown RBP5.43□□□□□ -1.54
VPS13C-209ENST00000560637 ARHGEF3Q9NR81 526 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 SNX15Q9NRS6 342 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 THEGQ9P2T0 379 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 MTCH2Q9Y6C9 303 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 WDR87Q6ZQQ6 2873 aa5.43□□□□□ -1.54
VPS13C-209ENST00000560637 EDDM13A0A1B0GTR0 161 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CPED1A4D0V7 1026 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 UPK3BL1B0FP48 263 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 UPK3BL2E5RIL1 263 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 H0Y858 1186 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SOX1O00570 391 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ALOX15BO15296 676 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 LAMTOR5O43504 91 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 RPP40O75818 363 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 EGFP01133 1207 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SLC35G4P0C7Q5 338 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CPA3P15088 417 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF16P17020 682 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF8P17098 575 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 VCLP18206 1134 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 SERPINB3P29508 390 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 DAB2P98082 770 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 MESP2Q0VG99 397 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 TDGQ13569 410 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 RBBP5Q15291 538 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CYTH1Q15438 398 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CPSF6Q16630 551 aaKnown RBP eCLIP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 HTR3DQ70Z44 454 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CYP4X1Q8N118 509 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 FBXO39Q8N4B4 442 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 NAT8LQ8N9F0 302 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 BRSK1Q8TDC3 778 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 WFIKKN2Q8TEU8 576 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 TMEM174Q8WUU8 243 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 NXNL1Q96CM4 212 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 CCDC124Q96CT7 223 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 MRGPRX2Q96LB1 330 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 LENG8Q96PV6 779 aaPredicted RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 FERD3LQ96RJ6 166 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ZCCHC2Q9C0B9 1178 aaKnown RBP5.42□□□□□ -1.54
VPS13C-209ENST00000560637 ABCG4Q9H172 646 aa5.42□□□□□ -1.54
VPS13C-209ENST00000560637 PHPT1Q9NRX4 125 aaPredicted RBP5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms