RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 ISLR2Q6UXK2 745 aa11.67□□□□□ -0.54
SHMT2-212ENST00000554467 SCUBE1Q8IWY4 988 aa11.67□□□□□ -0.54
SHMT2-212ENST00000554467 RBM15BQ8NDT2 890 aaKnown RBP11.67□□□□□ -0.54
SHMT2-212ENST00000554467 OR4L1Q8NH43 312 aa11.67□□□□□ -0.54
SHMT2-212ENST00000554467 CALML6Q8TD86 181 aa11.67□□□□□ -0.54
SHMT2-212ENST00000554467 STYXQ8WUJ0 223 aa11.67□□□□□ -0.54
SHMT2-212ENST00000554467 CDKN2AIPNLQ96HQ2 116 aa11.67□□□□□ -0.54
SHMT2-212ENST00000554467 CEP295NLQ96MC4 621 aa11.67□□□□□ -0.54
SHMT2-212ENST00000554467 FKBPLQ9UIM3 349 aa11.67□□□□□ -0.54
SHMT2-212ENST00000554467 HCFC2Q9Y5Z7 792 aa11.67□□□□□ -0.54
SHMT2-212ENST00000554467 PLXNA4Q9HCM2 1894 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 PER2O15055 1255 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 RPP40O75818 363 aaKnown RBP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 ARHGEF15O94989 841 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 FMO4P31512 558 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 IRS1P35568 1242 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 POU4F1Q01851 419 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 TNK2Q07912 1038 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 HJURPQ8NCD3 748 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 C17orf80Q9BSJ5 609 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 POMKQ9H5K3 350 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 CATSPERZQ9NTU4 200 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 POLR3BQ9NW08 1133 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 LHX3Q9UBR4 397 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 EVLQ9UI08 416 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 PCDHGB4Q9UN71 923 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 ANKRD6Q9Y2G4 727 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 PCDHGB5Q9Y5G0 923 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 OR1I1O60431 355 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 HNRNPCP07910 306 aaKnown RBP eCLIP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 ZNF24P17028 368 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 PCSK6P29122 969 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 HADHAP40939 763 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 TUBB3Q13509 450 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 Q6ZNB5 142 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 PIANPQ8IYJ0 282 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 MARK4Q96L34 752 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 OR52B2Q96RD2 323 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 LRRC3Q9BY71 257 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 NUF2Q9BZD4 464 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 ZDHHC2Q9UIJ5 367 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 TDRKHQ9Y2W6 561 aaKnown RBP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 TYW5A2RUC4 315 aaKnown RBP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 TARM1B6A8C7 271 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 ZNF195O14628 629 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 TLL1O43897 1013 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 CIB2O75838 187 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 PAPSS2O95340 614 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 SMIM18P0DKX4 95 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 EPHA3P29320 983 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 SLC25A3Q00325 362 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 LIPMQ5VYY2 423 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 METTL25Q8N6Q8 603 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 OR6Y1Q8NGX8 325 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 GAB3Q8WWW8 586 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 CCDC97Q96F63 343 aaPredicted RBP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 TMEM106CQ9BVX2 250 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 GALPQ9UBC7 116 aa11.66□□□□□ -0.54
SHMT2-212ENST00000554467 APOBEC2Q9Y235 224 aaKnown RBP11.66□□□□□ -0.54
SHMT2-212ENST00000554467 OBSL1O75147 1896 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ANKRD66B4E2M5 251 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 SPECC1L-ADORA2AF8WAN1 911 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 BOLA2-SMG1P6H3BVE0 249 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 LEFTY2O00292 366 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ZBTB14O43829 449 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 PDE5AO76074 875 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ADH1AP07327 375 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 CLCN5P51795 746 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 RAP1GDS1P52306 607 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 LMAN2Q12907 356 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 CBX2Q14781 532 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 LRRC73Q5JTD7 316 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 C6orf163Q5TEZ5 329 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ALG1LQ6GMV1 187 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 PSAPL1Q6NUJ1 521 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 LILRA6Q6PI73 481 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 RIPOR1Q6ZS17 1223 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 KIAA0408Q6ZU52 694 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 RBM23Q86U06 439 aaKnown RBP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 PDSS2Q86YH6 399 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ST13P4Q8IZP2 240 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 PHTF2Q8N3S3 785 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ING5Q8WYH8 240 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 PPP2R3CQ969Q6 453 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 MRPL46Q9H2W6 279 aaKnown RBP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ASAH2Q9NR71 780 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 LSM7Q9UK45 103 aaKnown RBP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 OR51B4Q9Y5P0 310 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 TRIM24O15164 1050 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 GLUD1P00367 558 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 TFEBP19484 476 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ZNF140P52738 457 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ATXN3P54252 364 aaPredicted RBP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ADARP55265 1226 aaKnown RBP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 TIAL1Q01085 375 aaKnown RBP eCLIP11.65□□□□□ -0.547e-9■■□□□ 13.1
SHMT2-212ENST00000554467 ZRSR2Q15696 482 aaKnown RBP11.65□□□□□ -0.54
SHMT2-212ENST00000554467 FBXL19Q6PCT2 694 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ACAD11Q709F0 780 aa11.65□□□□□ -0.54
SHMT2-212ENST00000554467 ZNF554Q86TJ5 538 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms