RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 VPS45Q9NRW7 570 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SLCO3A1Q9UIG8 710 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 H7C4K7 107 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 NRG2O14511 850 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SCAMP1O15126 338 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 INPPL1O15357 1258 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 RPP40O75818 363 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 RBP1P09455 135 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CKMT2P17540 419 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SYN1P17600 705 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 RPL10P27635 214 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PPARGP37231 505 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 HSPA7P48741 367 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TUFMP49411 452 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 HSPA14Q0VDF9 509 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 NAB1Q13506 487 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TECRLQ5HYJ1 363 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 FBXW8Q8N3Y1 598 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TSPAN17Q96FV3 270 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TMEM74Q96NL1 305 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 C17orf80Q9BSJ5 609 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 HGH1Q9BTY7 390 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PRKD2Q9BZL6 878 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 ZDHHC6Q9H6R6 413 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 DNAJC28Q9NX36 388 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 NSMCE4AQ9NXX6 385 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 STX18Q9P2W9 335 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CRLS1Q9UJA2 301 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PCDHGB4Q9UN71 923 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PCDHGB5Q9Y5G0 923 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TYW5A2RUC4 315 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TRAFD1O14545 582 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TEX28O15482 410 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 ECI2O75521 394 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TIPRLO75663 272 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CDK14O94921 469 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 LMNAP02545 664 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 UGT2B4P06133 528 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PCNAP12004 261 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 AOC1P19801 751 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 GRIA3P42263 894 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CLCN5P51795 746 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CDC16Q13042 620 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 BOP1Q14137 746 aaKnown RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 C6orf52Q5T4I8 152 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 NET1Q7Z628 596 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 LCA5Q86VQ0 697 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SLC22A15Q8IZD6 547 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 OR52B6Q8NGF0 335 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 OR6Y1Q8NGX8 325 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 BRSK1Q8TDC3 778 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CYB5D2Q8WUJ1 264 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 LPGAT1Q92604 370 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 FOXJ1Q92949 421 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 ZNF184Q99676 751 aaPredicted RBP5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TBCDQ9BTW9 1192 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CIPCQ9C0C6 399 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 LINC00597Q9H2U6 94 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PFDN4Q9NQP4 134 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 TAS2R13Q9NYV9 303 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 CLIC5Q9NZA1 410 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SLAMF8Q9P0V8 285 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 VPS51Q9UID3 782 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 SUFUQ9UMX1 484 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PKP3Q9Y446 797 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 DTNAQ9Y4J8 743 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 RAD54BQ9Y620 910 aa5.57□□□□□ -1.52
LIMA1-215ENST00000552823 PRR23AA6NEV1 266 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ANTXRLA6NF34 631 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ANKRD66B4E2M5 251 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 AKAP10O43572 662 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 HNRNPCL1O60812 293 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CXCL14O95715 111 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CRTAMO95727 393 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MTHFD1P11586 935 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CCL5P13501 91 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ATP6V1C1P21283 382 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 LPOP22079 712 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ITGB8P26012 769 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CD70P32970 193 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 HTR6P50406 440 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 KPNA2P52292 529 aaKnown RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 DGKQP52824 942 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 EPHB3P54753 998 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 FAM189BP81408 668 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ARF5P84085 180 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 HMGCS1Q01581 520 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 IL1RL1Q01638 556 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 RAD51Q06609 339 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ARHGEF7Q14155 803 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 TIGD2Q4W5G0 525 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 MTX3Q5HYI7 312 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 ADGRF1Q5T601 910 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 IL23RQ5VWK5 629 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 CYS1Q717R9 158 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 LRRC43Q8N309 656 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 AFAP1L2Q8N4X5 818 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 C2orf73Q8N5S3 287 aaPredicted RBP5.56□□□□□ -1.52
LIMA1-215ENST00000552823 PHC3Q8NDX5 983 aa5.56□□□□□ -1.52
LIMA1-215ENST00000552823 GABPB2Q8TAK5 448 aaPredicted RBP5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms