RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TMC8Q8IU68 726 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CMTR2Q8IYT2 770 aaKnown RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 RBFAQ8N0V3 343 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 LRRC17Q8N6Y2 441 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 LPCAT1Q8NF37 534 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ANKRD49Q8WVL7 239 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 SLC44A1Q8WWI5 657 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 FKBP10Q96AY3 582 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PRICKLE1Q96MT3 831 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 IKZF3Q9UKT9 509 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CDH7Q9ULB5 785 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PIGBOS1A0A0B4J2F0 54 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 SMIM35A0A1B0GVV1 85 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 SNAP23O00161 211 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 INPPL1O15357 1258 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PMPCBO75439 489 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 WBP4O75554 376 aaKnown RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 REM1O75628 298 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 RPP40O75818 363 aaKnown RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CAPN1P07384 714 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 BPGMP07738 259 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 MIPP30301 263 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 GSTT1P30711 240 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ATP5C1P36542 298 aaKnown RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CDK9P50750 372 aaKnown RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 OVGP1Q12889 678 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 NOMO1Q15155 1222 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ITPRIPL2Q3MIP1 535 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CWF19L1Q69YN2 538 aaKnown RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 FBXO42Q6P3S6 717 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CHST15Q7LFX5 561 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 AKAP14Q86UN6 197 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 TTC29Q8NA56 475 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 LNX1Q8TBB1 728 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 HMGB4Q8WW32 186 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 C2orf49Q9BVC5 232 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 IL1RL2Q9HB29 575 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PAK6Q9NQU5 681 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ARHGEF4Q9NR80 690 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 C5orf60A6NFR6 353 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 TIPRLO75663 272 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 HIST1H2ABP04908 130 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 KCNJ1P48048 391 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ARFIP1P53367 373 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 SMAD3P84022 425 aaKnown RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 DMPKQ09013 629 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 DENND5AQ6IQ26 1287 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 LIN54Q6MZP7 749 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 HIST3H2AQ7L7L0 130 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 FAM124AQ86V42 546 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 OR2T34Q8NGX1 318 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 OR2T3Q8NH03 318 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 HIST1H2ACQ93077 130 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PPP1R36Q96LQ0 422 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 TEKT5Q96M29 485 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ZNF599Q96NL3 588 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 C1orf21Q9H246 121 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CPVLQ9H3G5 476 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PHPT1Q9NRX4 125 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 LIMD1Q9UGP4 676 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 BTBD3Q9Y2F9 522 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 GMPPBQ9Y5P6 360 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 STON1Q9Y6Q2 735 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CPED1A4D0V7 1026 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 F5H423 210 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 B4GALT4O60513 344 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 AGR2O95994 175 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CBSLP0DN79 551 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 TCN1P20061 433 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CBSP35520 551 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CLCN3P51790 818 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 CACNG1Q06432 222 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 TUBA3CQ13748 450 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 TRIM25Q14258 630 aaKnown RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ACOX1Q15067 660 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 C10orf62Q5T681 223 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 NIPAL1Q6NVV3 410 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 BEND7Q8N7W2 519 aaPredicted RBP7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PPTC7Q8NI37 304 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 RHBDD1Q8TEB9 315 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 POPDC3Q9HBV1 291 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ZSCAN32Q9NX65 697 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 PTTG2Q9NZH5 202 aa7.8□□□□□ -1.16
VPS13D-211ENST00000543710 ARFGEF2Q9Y6D5 1785 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 METTL21EPA6NDL7 271 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 G3V2T6 193 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 FPGTO14772 594 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 YKT6O15498 198 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 VEGFDO43915 354 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 TM7SF2O76062 418 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 VTNP04004 478 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 TYMPP19971 482 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 TPGS2Q68CL5 300 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 BAIAP2L2Q6UXY1 529 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 CERS6Q6ZMG9 384 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 FAM183BPQ6ZVS7 135 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 AZIN2Q96A70 460 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 CEP295NLQ96MC4 621 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 ACOX2Q99424 681 aa7.79□□□□□ -1.16
VPS13D-211ENST00000543710 APOL2Q9BQE5 337 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms