RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	C20orf96	Q9NUD7	363 aa	Predicted RBP	10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	FAM86C1	Q9NVL1	165 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	SUSD2	Q9UGT4	822 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	CRLS1	Q9UJA2	301 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	RIMKLB	Q9ULI2	386 aa		10.11	□□□□□ -0.79
CPSF7-221	ENST00000543545	CCDC162P	A2VCL2	907 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545		A6NNZ2	444 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	PRR5-ARHGAP8	B1AHC4	643 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	BHMG1	C9JSJ3	638 aa	Predicted RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545		E7ESA3	106 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545		K7ESM1	405 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	CACNB4	O00305	520 aa	Predicted RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	SRP72	O76094	671 aa	Known RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	USP1	O94782	785 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	VAPB	O95292	243 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	PRAMEF1	O95521	474 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	ASMTL	O95671	621 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	GOT2	P00505	430 aa	Known RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	CFI	P05156	583 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	TSHR	P16473	764 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	CD38	P28907	300 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	IGFALS	P35858	605 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	DPP6	P42658	865 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	THOP1	P52888	689 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	DPT	Q07507	201 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	ITGA9	Q13797	1035 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	FASTKD3	Q14CZ7	662 aa	Known RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	AGER	Q15109	404 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	TEAD4	Q15561	434 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	FASTKD1	Q53R41	847 aa	Known RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	SPANXN3	Q5MJ09	141 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	AFTPH	Q6ULP2	937 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	CCNI2	Q6ZMN8	369 aa	Predicted RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	KDM7A	Q6ZMT4	941 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	NLRP8	Q86W28	1048 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	SYT12	Q8IV01	421 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	GSPT2	Q8IYD1	628 aa	Known RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	OR13J1	Q8NGT2	312 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	OR4L1	Q8NH43	312 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	RUBCN	Q92622	972 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	PEX13	Q92968	403 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	ULK4	Q96C45	1275 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	KLHDC7B	Q96G42	594 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	C9orf72	Q96LT7	481 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	FCRL3	Q96P31	734 aa	Predicted RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	TTC1	Q99614	292 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	APOO	Q9BUR5	198 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	KCNH6	Q9H252	994 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	SEMA4A	Q9H3S1	761 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	WDR26	Q9H7D7	661 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	VPS37B	Q9H9H4	285 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	TM9SF3	Q9HD45	589 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	PHPT1	Q9NRX4	125 aa	Predicted RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	TREX1	Q9NSU2	369 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	MOSPD1	Q9UJG1	213 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	SMG5	Q9UPR3	1016 aa	Known RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	OR1A2	Q9Y585	309 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545	TEX264	Q9Y6I9	313 aa		10.1	□□□□□ -0.79
CPSF7-221	ENST00000543545		A0A1B0GTW7	788 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	POM121B	A6NF01	834 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	OR51F1	A6NGY5	319 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	GOLGA8K	D6RF30	607 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545		H0Y8X5	98 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	GOLGA8T	H3BQL2	631 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	MAGEC1	O60732	1142 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	SLC25A14	O95258	325 aa	Predicted RBP	10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	THEGL	P0DJG4	465 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	HTR1B	P28222	390 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	PML	P29590	882 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	RABIF	P47224	123 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	CSNK1E	P49674	416 aa	Known RBP	10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	AFF3	P51826	1226 aa	Known RBP	10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	XIAP	P98170	497 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	CACNG1	Q06432	222 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	PEX6	Q13608	980 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	PTK2B	Q14289	1009 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	NAA30	Q147X3	362 aa	Predicted RBP	10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	SLMAP	Q14BN4	828 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	LONRF1	Q17RB8	773 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	ATP13A5	Q4VNC0	1218 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	HENMT1	Q5T8I9	393 aa	Known RBP	10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	KIAA0930	Q6ICG6	404 aa	Predicted RBP	10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	DOK6	Q6PKX4	331 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	ADAMTSL4	Q6UY14	1074 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	KYAT3	Q6YP21	454 aa	Known RBP	10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	UNC5A	Q6ZN44	842 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	GCNT7	Q6ZNI0	430 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	SNX20	Q7Z614	316 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	TMEM135	Q86UB9	458 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	TRIM74	Q86UV6	250 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	HEATR4	Q86WZ0	1026 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	PELI3	Q8N2H9	469 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	MFSD2A	Q8NA29	543 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	TMEM145	Q8NBT3	493 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	OR13H1	Q8NG92	308 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	FAM174A	Q8TBP5	190 aa		10.09	□□□□□ -0.79
CPSF7-221	ENST00000543545	DCUN1D1	Q96GG9	259 aa		10.09	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms