RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 LTBP2Q14767 1821 aa16.26■□□□□ 0.19
COL4A1-204ENST00000543140 NCF1BA6NI72 391 aaPredicted RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 NCF1CA8MVU1 366 aaPredicted RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 CDC7O00311 574 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 NCF1P14598 390 aaPredicted RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 GCKP35557 465 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 TSNQ15631 228 aaKnown RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 GEN1Q17RS7 908 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 LRRC26Q2I0M4 334 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 INO80DQ53TQ3 878 aaPredicted RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 ZNF783Q6ZMS7 281 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 GK5Q6ZS86 529 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 BBS7Q8IWZ6 715 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 PELI3Q8N2H9 469 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 TTC30BQ8N4P2 665 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 RNF148Q8N7C7 305 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 SIDT2Q8NBJ9 832 aaKnown RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 EID2BQ96D98 161 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 CDRT15Q96T59 188 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 SYTL2Q9HCH5 934 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 RNF112Q9ULX5 631 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 PTGDR2Q9Y5Y4 395 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 MTTPP55157 894 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 PKNOX1P55347 436 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 RAD51Q06609 339 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 CYHR1Q6ZMK1 362 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 LYSMD3Q7Z3D4 306 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 CMTR2Q8IYT2 770 aaKnown RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 USP13Q92995 863 aaPredicted RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 TCF12Q99081 682 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 GPR63Q9BZJ6 419 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 SARS2Q9NP81 518 aaKnown RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 MID1IP1Q9NPA3 183 aa16.25■□□□□ 0.19
COL4A1-204ENST00000543140 EVLQ9UI08 416 aaPredicted RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 TSR3Q9UJK0 312 aaKnown RBP16.25■□□□□ 0.19
COL4A1-204ENST00000543140 A0A1W2PRU2 124 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 TRIM43BA6NCK2 446 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 NPEPPSL1A6NEC2 478 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 IQCF5A8MTL0 148 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 STX16-NPEPL1H3BU86 382 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 UBDO15205 165 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 GPC4O75487 556 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 FGF18O76093 207 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 OLFM2O95897 454 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 NFKB2Q00653 900 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 GALNT1Q10472 559 aaPredicted RBP16.24■□□□□ 0.19
COL4A1-204ENST00000543140 ART3Q13508 389 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 RAB44Q7Z6P3 723 aaPredicted RBP16.24■□□□□ 0.19
COL4A1-204ENST00000543140 TRPC4APQ8TEL6 797 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 MRPS31Q92665 395 aaKnown RBP16.24■□□□□ 0.19
COL4A1-204ENST00000543140 KIAA1191Q96A73 305 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 TRIM43Q96BQ3 446 aaPredicted RBP16.24■□□□□ 0.19
COL4A1-204ENST00000543140 C3orf30Q96M34 536 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 TRMOQ9BU70 441 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 BEGAINQ9BUH8 593 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 TFB2MQ9H5Q4 396 aaKnown RBP16.24■□□□□ 0.19
COL4A1-204ENST00000543140 FBRSL1Q9HCM7 1045 aaKnown RBP16.24■□□□□ 0.19
COL4A1-204ENST00000543140 S100A14Q9HCY8 104 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 NDE1Q9NXR1 346 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 KIAA1671Q9BY89 1806 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 MYO7AQ13402 2215 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 PRRC2BQ5JSZ5 2229 aaKnown RBP16.24■□□□□ 0.19
COL4A1-204ENST00000543140 DENND4CQ5VZ89 1909 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 A8MX80 341 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 BTN3A1O00481 513 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 SLC22A2O15244 555 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 CDK14O94921 469 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 PKMP14618 531 aaKnown RBP16.24■□□□□ 0.19
COL4A1-204ENST00000543140 CHRM3P20309 590 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 ATP6V1C1P21283 382 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 TTPAP49638 278 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 FOXA1P55317 472 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 SATB1Q01826 763 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 CTSL3PQ5NE16 218 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 C1orf53Q5VUE5 145 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 PPFIBP2Q8ND30 876 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 RHEBL1Q8TAI7 183 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 STAG3L4Q8TBR4 150 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 STON2Q8WXE9 905 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 PAWRQ96IZ0 340 aaKnown RBP16.24■□□□□ 0.19
COL4A1-204ENST00000543140 ANKRD27Q96NW4 1050 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 KCNA7Q96RP8 456 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 DERL2Q9GZP9 239 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 CCDC167Q9P0B6 97 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 PKP3Q9Y446 797 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 ZNF711Q9Y462 761 aa16.24■□□□□ 0.19
COL4A1-204ENST00000543140 A0A1B0GTL3 188 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 LCHNA4D1U4 455 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 GFRA2O00451 464 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 LILRB3O75022 631 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 CLASP2O75122 1294 aaKnown RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 ECI2O75521 394 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 LATS1O95835 1130 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 PENKP01210 267 aaPredicted RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 EEF1DP29692 281 aaKnown RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 ADSLP30566 484 aaPredicted RBP16.23■□□□□ 0.19
COL4A1-204ENST00000543140 RFC2P35250 354 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 C16orf89Q6UX73 402 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 CHSY3Q70JA7 882 aa16.23■□□□□ 0.19
COL4A1-204ENST00000543140 KBTBD2Q8IY47 623 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms