RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 KIFC1Q9BW19 673 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 PNMA8BQ9ULN7 279 aaPredicted RBP12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 USP22Q9UPT9 525 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 PCDHB3Q9Y5E6 796 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 SNX10Q9Y5X0 201 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 PCNTO95613 3336 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 CCDC154A6NI56 674 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 DAB1O75553 588 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 GSNP06396 782 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 AXLP30530 894 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 LEPRP48357 1165 aaKnown RBP12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 ALDH3A2P51648 485 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 VBP1P61758 197 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 IL5RAQ01344 420 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 SELENBP1Q13228 472 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 PKDCCQ504Y2 493 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 ATAD3BQ5T9A4 648 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 SYPL2Q5VXT5 272 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 GLYATQ6IB77 296 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 METTL7BQ6UX53 244 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 TMC5Q6UXY8 1006 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 CYP2U1Q7Z449 544 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 TSPAN17Q96FV3 270 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 SMURF2Q9HAU4 748 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 LTB4R2Q9NPC1 389 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 ZNF277Q9NRM2 450 aaPredicted RBP12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 PIGVQ9NUD9 493 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 DDIT4Q9NX09 232 aa12.81□□□□□ -0.36
SFSWAP-209ENST00000540469 HS6ST1O60243 411 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 SIX3O95343 332 aaPredicted RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 VTNP04004 478 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 UMPSP11172 480 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 JUNBP17275 347 aaPredicted RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ARF4P18085 180 aaPredicted RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 MTHFRP42898 656 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 FAM98BQ52LJ0 330 aaKnown RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 GPR158Q5T848 1215 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 UGT3A1Q6NUS8 523 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 SPESP1Q6UW49 350 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 SCIMPQ6UWF3 145 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 NPWQ8N729 165 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 PTGR2Q8N8N7 351 aaPredicted RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 UPF1Q92900 1129 aaKnown RBP eCLIP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 WNT8BQ93098 351 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 SPATA33Q96N06 139 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 KCNA7Q96RP8 456 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 CTRCQ99895 268 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 RMND5AQ9H871 391 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ABCD2Q9UBJ2 740 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 AAR2Q9Y312 384 aaKnown RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 AZIN1O14977 448 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 DCLK1O15075 740 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 IST1P53990 364 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 COPZ1P61923 177 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ILF2Q12905 390 aaKnown RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ARL13BQ3SXY8 428 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 FBXO48Q5FWF7 155 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 C6orf141Q5SZD1 244 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 LDB1Q86U70 411 aaPredicted RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ARMC8Q8IUR7 673 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 DCP1BQ8IZD4 617 aaKnown RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 FLAD1Q8NFF5 587 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 FBXO30Q8TB52 745 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 NDNFQ8TB73 568 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 TEKT5Q96M29 485 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 TRMOQ9BU70 441 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ASPSCR1Q9BZE9 553 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 SIK2Q9H0K1 926 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ENPP5Q9UJA9 477 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 PCDHGA8Q9Y5G5 932 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ORC6Q9Y5N6 252 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 NRXN2Q9P2S2 1712 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 IGKV6D-21A0A0A0MT36 114 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 TTC24A2A3L6 582 aaPredicted RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 FXYD1O00168 92 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 WNT10BO00744 389 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 UBFD1O14562 309 aaKnown RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 AGXTP21549 392 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 LMO2P25791 158 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ADRA1BP35368 520 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 NDUFV1P49821 464 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 DIO3P55073 304 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ARPC4P59998 168 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 MRPS15P82914 257 aaKnown RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 IFITM3Q01628 133 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 PFKFB4Q16877 469 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 ARHGAP17Q68EM7 881 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 KCTD11Q693B1 232 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 VASH1Q7L8A9 365 aaPredicted RBP12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 GOLM1Q8NBJ4 401 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 PSD2Q9BQI7 771 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 TRIM54Q9BYV2 358 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 GSTO2Q9H4Y5 243 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 EPS8L2Q9H6S3 715 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 AS3MTQ9HBK9 375 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 IGSF5Q9NSI5 407 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 KLHL3Q9UH77 587 aa12.8□□□□□ -0.36
SFSWAP-209ENST00000540469 G3V2T6 193 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 H0Y626 953 aa12.79□□□□□ -0.36
SFSWAP-209ENST00000540469 H0Y858 1186 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms