RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 TMPRSS4Q9NRS4 437 aa8.28□□□□□ -1.08
NEDD8-207ENST00000533242 RAB6BQ9NRW1 208 aa8.28□□□□□ -1.08
NEDD8-207ENST00000533242 THSD1Q9NS62 852 aa8.28□□□□□ -1.08
NEDD8-207ENST00000533242 BAIAP2L1Q9UHR4 511 aa8.28□□□□□ -1.08
NEDD8-207ENST00000533242 F5H423 210 aaPredicted RBP8.27□□□□□ -1.09
NEDD8-207ENST00000533242 KLK10O43240 276 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 PRPSAP2O60256 369 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 USP12O75317 370 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 ALPPL2P10696 532 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 MAT2AP31153 395 aaKnown RBP8.27□□□□□ -1.09
NEDD8-207ENST00000533242 GRIA1P42261 906 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 DUSP3P51452 185 aaPredicted RBP8.27□□□□□ -1.09
NEDD8-207ENST00000533242 GTF2A1P52655 376 aaPredicted RBP8.27□□□□□ -1.09
NEDD8-207ENST00000533242 PLK1P53350 603 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 YWHAZP63104 245 aaKnown RBP8.27□□□□□ -1.09
NEDD8-207ENST00000533242 PITX1P78337 314 aaPredicted RBP8.27□□□□□ -1.09
NEDD8-207ENST00000533242 LY6DQ14210 128 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 RASA2Q15283 850 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 SWT1Q5T5J6 900 aaKnown RBP8.27□□□□□ -1.09
NEDD8-207ENST00000533242 RGS9BPQ6ZS82 235 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 CDHR3Q6ZTQ4 885 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 CEP128Q6ZU80 1094 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 PCGF5Q86SE9 256 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 TMEM110Q86TL2 294 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 LGI2Q8N0V4 545 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 PDIK1LQ8N165 341 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 CFAP52Q8N1V2 620 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 MPP5Q8N3R9 675 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 DQX1Q8TE96 717 aaKnown RBP8.27□□□□□ -1.09
NEDD8-207ENST00000533242 FRS2Q8WU20 508 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 C10orf82Q8WW14 230 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 OR8D1Q8WZ84 308 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 ZNF75CPQ92670 426 aaPredicted RBP8.27□□□□□ -1.09
NEDD8-207ENST00000533242 ERP27Q96DN0 273 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 NOD2Q9HC29 1040 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 ETNK2Q9NVF9 386 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 NLGN3Q9NZ94 848 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 L3MBTL1Q9Y468 752 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 ZNF462Q96JM2 2506 aa8.27□□□□□ -1.09
NEDD8-207ENST00000533242 A0A1B0GVM2 712 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 C1QTNF3-AMACRE9PGA6 284 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 CHUKO15111 745 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 METTL18O95568 372 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 THEGLP0DJG4 465 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 T-ENOLP0DO92 83 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 TACR2P21452 398 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 STK19P49842 368 aaPredicted RBP8.26□□□□□ -1.09
NEDD8-207ENST00000533242 METAP1P53582 386 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 SLC18A1P54219 525 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 OXCT1P55809 520 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 CNTN1Q12860 1018 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 KRT81Q14533 505 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 AGBL4Q5VU57 503 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 CES4AQ5XG92 561 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 SLC9A4Q6AI14 798 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 ZNF534Q76KX8 674 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 PALM2Q8IXS6 379 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 PYROXD2Q8N2H3 581 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 CCDC185Q8N715 623 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 TMEM145Q8NBT3 493 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 RFWD2Q8NHY2 731 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 GRAMD1AQ96CP6 724 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 FAF2Q96CS3 445 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 KLHL29Q96CT2 875 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 TBC1D31Q96DN5 1066 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 CCDC97Q96F63 343 aaPredicted RBP8.26□□□□□ -1.09
NEDD8-207ENST00000533242 IFT43Q96FT9 208 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 PRR11Q96HE9 360 aaPredicted RBP8.26□□□□□ -1.09
NEDD8-207ENST00000533242 RPL10LQ96L21 214 aaKnown RBP8.26□□□□□ -1.09
NEDD8-207ENST00000533242 HSFY1Q96LI6 401 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 FRMD8P1Q9BZ68 369 aaPredicted RBP8.26□□□□□ -1.09
NEDD8-207ENST00000533242 POPDC2Q9HBU9 364 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 UCKL1Q9NWZ5 548 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 KLHL14Q9P2G3 628 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 TTLL3Q9Y4R7 772 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 FFAR2O15552 330 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 SLC28A2O43868 658 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 PIAS2O75928 621 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 FYNP06241 537 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 GIMD1P0DJR0 217 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 CCNB1P14635 433 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 VAV1P15498 845 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 MSH2P43246 934 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 ETV4P43268 484 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 SLC6A3Q01959 620 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 STILQ15468 1287 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 ACCSLQ4AC99 568 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 NEK5Q6P3R8 708 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 TRMT10BQ6PF06 316 aaKnown RBP8.26□□□□□ -1.09
NEDD8-207ENST00000533242 BEND5Q7L4P6 421 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 FAM174AQ8TBP5 190 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 SLC44A1Q8WWI5 657 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 CFAP36Q96G28 342 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 APOLD1Q96LR9 279 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 PHACTR1Q9C0D0 580 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 ETNK1Q9HBU6 452 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 NPHS2Q9NP85 383 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 SARDHQ9UL12 918 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 PPM1HQ9ULR3 514 aa8.26□□□□□ -1.09
NEDD8-207ENST00000533242 CA5BQ9Y2D0 317 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms