RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DNAJC3Q13217 504 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 TUBA3CQ13748 450 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 PIGHQ14442 188 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 KIF19Q2TAC6 998 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 ZNF648Q5T619 568 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 SPOCD1Q6ZMY3 1216 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 GSTA5Q7RTV2 222 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 DGLUCYQ7Z3D6 616 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 CPXM2Q8N436 756 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 LILRB1Q8NHL6 650 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 BRSK1Q8TDC3 778 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 TRPV5Q9NQA5 729 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 CTNNAL1Q9UBT7 734 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 KLHL3Q9UH77 587 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 IL36AQ9UHA7 158 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 PPP2R2CQ9Y2T4 447 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 A6NL46 340 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 C16orf96A6NNT2 1141 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 GPR39O43194 453 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 RNGTTO60942 597 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 EPN2O95208 641 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 IL33O95760 270 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 IGSF6O95976 241 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 RHOQP17081 205 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 TPH1P17752 444 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 PBLDP30039 288 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 P2RY2P41231 377 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 DAB2P98082 770 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 BCL2L1Q07817 233 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 TRIM14Q14142 442 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 GNA13Q14344 377 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 PTPRCAPQ14761 206 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 PLA2G4EQ3MJ16 856 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 SNAP47Q5SQN1 464 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 HP1BP3Q5SSJ5 553 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 ZNF362Q5T0B9 420 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 DARS2Q6PI48 645 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 NLRP9Q7RTR0 991 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 DSG4Q86SJ6 1040 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 NT5DC3Q86UY8 548 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 RBFAQ8N0V3 343 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 EID2Q8N6I1 236 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 RTL3Q8N8U3 475 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 SUMF1Q8NBK3 374 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 PCDH19Q8TAB3 1148 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 BLOC1S5Q8TDH9 187 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 ARHGEF2Q92974 986 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 SCAMP4Q969E2 229 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 ARRDC3Q96B67 414 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 FAM129BQ96TA1 746 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 SELENOSQ9BQE4 189 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 ACE2Q9BYF1 805 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 TRIM31Q9BZY9 425 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 ABCG4Q9H172 646 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 INIPQ9NRY2 104 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 SNX11Q9Y5W9 270 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 GPC6Q9Y625 555 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 SVILO95425 2214 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 PAHP00439 452 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 IGLV3-27P01718 113 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 CDH5P33151 784 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 PTGS2P35354 604 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 CHRNA4P43681 627 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 COPAP53621 1224 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 IST1P53990 364 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 EIF4HQ15056 248 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 CLPPQ16740 277 aaPredicted RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 CARD16Q5EG05 197 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 TUBA3EQ6PEY2 450 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 CAMKK1Q8N5S9 505 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 RFFLQ8WZ73 363 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 ARL8AQ96BM9 186 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 XAB2Q9HCS7 855 aaKnown RBP7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 CAPN6Q9Y6Q1 641 aa7.89□□□□□ -1.15
LIMCH1-219ENST00000514096 PRSS47A8MTI9 375 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 A8MUI8 341 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PROSCO94903 275 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 SYF2O95926 243 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 CHEK2O96017 543 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 F7P08709 466 aaPredicted RBP7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 EVI2BP34910 448 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PTPN9P43378 593 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 MAPK9P45984 424 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 KCNJ1P48048 391 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 DEFB133Q30KQ1 61 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 BOLA3Q53S33 107 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PRRT3Q5FWE3 981 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PPM1JQ5JR12 505 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 STPG1Q5TH74 334 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 RFPL4BQ6ZWI9 263 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PARS2Q7L3T8 475 aaKnown RBP7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 TSPAN33Q86UF1 283 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 HEATR4Q86WZ0 1026 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 SFTPA2Q8IWL1 248 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PHTF2Q8N3S3 785 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 LINC00469Q8N7U9 141 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 PSD4Q8NDX1 1056 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 OR2AP1Q8NGE2 309 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 WFIKKN2Q8TEU8 576 aa7.88□□□□□ -1.15
LIMCH1-219ENST00000514096 LZICQ8WZA0 190 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms