RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MTCL1Q9Y4B5 1905 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PLK4O00444 970 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 COPEO14579 308 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 MUSKO15146 869 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 MATN3O15232 486 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 NCAM2O15394 837 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 NARSO43776 548 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 UGT2B4P06133 528 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 RALGDSQ12967 914 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 RUNX3Q13761 415 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 NUMA1Q14980 2115 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 CYP1B1Q16678 543 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 PITRM1Q5JRX3 1037 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 HABP4Q5JVS0 413 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 FNBP1LQ5T0N5 605 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 PRR23CQ6ZRP0 262 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 DHDDSQ86SQ9 333 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 NUDCD3Q8IVD9 361 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 MPP5Q8N3R9 675 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 HPS1Q92902 700 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 ATP2A3Q93084 1043 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 GLOD4Q9HC38 313 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 BPIFA1Q9NP55 256 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 FAM8A1Q9UBU6 413 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 DRG1Q9Y295 367 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 TTC34A8MYJ7 566 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 E9PBE3 544 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 TMX2-CTNND1H3BSU7 103 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 FBP2O00757 339 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 INSIG1O15503 277 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 KLHL41O60662 606 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 FAM155BO75949 473 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 TOP3BO95985 862 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 EPHX1P07099 455 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 ITIH2P19823 946 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 ELK3P41970 407 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 PTPRCAPQ14761 206 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 MYLK3Q32MK0 819 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 PARP15Q460N3 678 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 IER5LQ5T953 404 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 MANEALQ5VSG8 457 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 CENPUQ71F23 418 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 ZNF786Q8N393 782 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 PSD4Q8NDX1 1056 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 FBXO36Q8NEA4 188 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 OR6P1Q8NGX9 317 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 OSCP1Q8WVF1 389 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 HDAC11Q96DB2 347 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 EBF4Q9BQW3 602 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 MAGEH1Q9H213 219 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 Q9H521 79 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 WARS2Q9UGM6 360 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 INTS6Q9UL03 887 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 V9GYQ6 96 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 BCLAF3A2AJT9 711 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 OXSR1O95747 527 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 OLFM2O95897 454 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 IL1BP01584 269 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 CCDC166P0CW27 439 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 SKIV2L2P42285 1042 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 RPL5P46777 297 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 HCAR3P49019 387 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 MAPKAPK2P49137 400 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 NDST2P52849 883 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 EPHA5P54756 1037 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 WNT3AP56704 352 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 STAT4Q14765 748 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 PON2Q15165 354 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 TCEA2Q15560 299 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 NEDD8Q15843 81 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 TRIM16LQ309B1 348 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 FUT11Q495W5 492 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 MSS51Q4VC12 460 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 LAYNQ6UX15 382 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 FAM124AQ86V42 546 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 UNC5BQ8IZJ1 945 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 ZNF669Q96BR6 464 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 ZNF419Q96HQ0 510 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 ACOX2Q99424 681 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 CEP44Q9C0F1 390 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 POLR1EQ9GZS1 481 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 FBRSL1Q9HCM7 1045 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 UTP6Q9NYH9 597 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 GDE1Q9NZC3 331 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 SEPT3Q9UH03 358 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 SLC8A2Q9UPR5 921 aa8.67□□□□□ -1.02
LIMCH1-209ENST00000509277 ILVBLA1L0T0 632 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 TRIM64CA6NLI5 447 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 HACD1B0YJ81 288 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 SERPINF2P08697 491 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 CCNCP24863 283 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 CD68P34810 354 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 PTPN7P35236 360 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 SERPINB5P36952 375 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 RGS19P49795 217 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 YBEYP58557 167 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 ARF5P84085 180 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 PDE1BQ01064 536 aa8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 EIF4EBP2Q13542 120 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-209ENST00000509277 PDK4Q16654 411 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms