RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CHORDC1Q9UHD1 332 aaPredicted RBP4.08□□□□□ -1.76
HMGB1P28-201ENST00000507778 KANSL1LA0AUZ9 987 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 OR2A25A4D2G3 310 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 A8MV72 311 aaPredicted RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 M0QZ24 198 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 P4HA2O15460 535 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 PLOD3O60568 738 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 MITFO75030 526 aaPredicted RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 NDUFS7O75251 213 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 ERAL1O75616 437 aaKnown RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 GLUD1P00367 558 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 EGFP01133 1207 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 TUBBP07437 444 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 NR2F1P10589 423 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 BDKRB2P30411 391 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 ARRB2P32121 409 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 KRT20P35900 424 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 MSH2P43246 934 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 GLUD2P49448 558 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 GPR143P51810 404 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 CALD1Q05682 793 aaKnown RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 TRAF2Q12933 501 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 KCNC3Q14003 757 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 PCLAFQ15004 111 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 ZNF260Q3ZCT1 412 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 EFHC1Q5JVL4 640 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 RARS2Q5T160 578 aaKnown RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 DCST1Q5T197 706 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 KRTAP5-3Q6L8H2 238 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 DUS1LQ6P1R4 473 aaKnown RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 C8orf82Q6P1X6 216 aaPredicted RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 KCTD18Q6PI47 426 aaPredicted RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 SDCCAG8Q86SQ7 713 aaPredicted RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 EPHX4Q8IUS5 362 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 ARID3BQ8IVW6 561 aaPredicted RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 FOXRED2Q8IWF2 684 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 SCML4Q8N228 414 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 NEXN-AS1Q8NBZ9 246 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 TRPC4APQ8TEL6 797 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 APBB2Q92870 758 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 LRRC59Q96AG4 307 aaKnown RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 SLC22A18Q96BI1 424 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 ORAI1Q96D31 301 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 GRAMD2BQ96HH9 432 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 EGLN2Q96KS0 407 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 SERINC2Q96SA4 455 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 SLF1Q9BQI6 1058 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 SIL1Q9H173 461 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 PIGMQ9H3S5 423 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 OSGEPL1Q9H4B0 414 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 MAGIXQ9H6Y5 334 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 EPB41L5Q9HCM4 733 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 ARHGEF38Q9NXL2 777 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 ACSL5Q9ULC5 683 aa4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 EXO1Q9UQ84 846 aaKnown RBP4.07□□□□□ -1.76
HMGB1P28-201ENST00000507778 ZNF644Q9H582 1327 aaPredicted RBP4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 A0A0U1RQJ8 604 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 CPED1A4D0V7 1026 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 FAM90A10PA6NDY2 464 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 SH2B2O14492 632 aaPredicted RBP4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 SOCS6O14544 535 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 SPINT2O43291 252 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 PLRG1O43660 514 aaKnown RBP4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 KCNJ13O60928 360 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 GAGE7O76087 117 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 ICAM1P05362 532 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 PRSS2P07478 247 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 GAGE12FP0CL80 117 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 GAGE12GP0CL81 117 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 GAGE12IP0CL82 117 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 LMO1P25800 156 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 LMAN1P49257 510 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 PCYT1AP49585 367 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 HSD17B4P51659 736 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 STAT2P52630 851 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 HNRNPH2P55795 449 aaKnown RBP4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 FOXM1Q08050 763 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 CRYZQ08257 329 aaKnown RBP4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 SREBF2Q12772 1141 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 GRSF1Q12849 480 aaKnown RBP eCLIP4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 CDC16Q13042 620 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 GAGE1Q13065 139 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 GAGE4Q13068 117 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 CTF1Q16619 201 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 FAM69BQ5VUD6 431 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 FRG2Q64ET8 278 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 TMEM198Q66K66 360 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 GPR139Q6DWJ6 353 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 ZNF549Q6P9A3 640 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 PRPF39Q86UA1 669 aaKnown RBP4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 FJX1Q86VR8 437 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 MCEMP1Q8IX19 187 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 SCYL3Q8IZE3 742 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 BEST3Q8N1M1 668 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 PELI3Q8N2H9 469 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 IL17RCQ8NAC3 791 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 OR1J2Q8NGS2 313 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 HM13Q8TCT9 377 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 MAGEC3Q8TD91 643 aa4.06□□□□□ -1.76
HMGB1P28-201ENST00000507778 WFIKKN2Q8TEU8 576 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms