RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 UGP2Q16851 508 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 TSR1Q2NL82 804 aaKnown RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 PLA2G4EQ3MJ16 856 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 RRAGBQ5VZM2 374 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 B3GNTL1Q67FW5 361 aaPredicted RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 PNCKQ6P2M8 343 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 MTFR2Q6P444 385 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 IYDQ6PHW0 289 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 FAM180AQ6UWF9 173 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 TMEM207Q6UWW9 146 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 LIPIQ6XZB0 460 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 BEND5Q7L4P6 421 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 PRSS42Q7Z5A4 293 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 SETD3Q86TU7 594 aaPredicted RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 PLXDC1Q8IUK5 500 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 CCDC65Q8IXS2 484 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 DMRTC2Q8IXT2 367 aaPredicted RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 ULK2Q8IYT8 1036 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 DNAJB14Q8TBM8 379 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 RSC1A1Q92681 617 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 MBD6Q96DN6 1003 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 SGSM3Q96HU1 749 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 SLC41A2Q96JW4 573 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 CNDP1Q96KN2 507 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 NSMCE3Q96MG7 304 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 NAP1L5Q96NT1 182 aaPredicted RBP4.74□□□□□ -1.65
USP4-209ENST00000475873 AGAP3Q96P47 875 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 OSBPL1AQ9BXW6 950 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 TEX101Q9BY14 249 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 NLNQ9BYT8 704 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 PANK2Q9BZ23 570 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 SIK2Q9H0K1 926 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 ATP13A1Q9HD20 1204 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 C1GALT1Q9NS00 363 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 DDIT4Q9NX09 232 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 COX16Q9P0S2 106 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 SEMA5BQ9P283 1151 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 SLC17A4Q9Y2C5 497 aa4.74□□□□□ -1.65
USP4-209ENST00000475873 RYR3Q15413 4870 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 ILVBLA1L0T0 632 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 LILRA5A6NI73 299 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 M0QYV0 167 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 SLC19A2O60779 497 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 CNOT3O75175 753 aaKnown RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 CTAG2O75638 210 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 TMCC1O94876 653 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 FBXO21O94952 628 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 ZNF202O95125 648 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 SOD1P00441 154 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 IVLP07476 585 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 EBLN1P0CF75 366 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 TNFAIP3P21580 790 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 OR1E1P30953 314 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 OTX2P32243 289 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 CCR1P32246 355 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 SPAM1P38567 509 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 SNRPFP62306 86 aaKnown RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 UBE2IP63279 158 aaKnown RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 CDK3Q00526 305 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 GNA12Q03113 381 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 RUNX1T1Q06455 604 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 SLC20A2Q08357 652 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 ELP6Q0PNE2 266 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 ABRQ12979 859 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 PCOLCEQ15113 449 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 PRKD1Q15139 912 aaPredicted RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 KNOP1Q1ED39 458 aaKnown RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 PYCR3Q53H96 274 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 RETSATQ6NUM9 610 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 FAM92BQ6ZTR7 304 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 STXBP4Q6ZWJ1 553 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 TRIM74Q86UV6 250 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 SLC9A9Q8IVB4 645 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 DSELQ8IZU8 1212 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 GUF1Q8N442 669 aaKnown RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 EXOC2Q96KP1 924 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 HSFY1Q96LI6 401 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 COQ10AQ96MF6 247 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 SLC2A13Q96QE2 648 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 OR2M4Q96R27 311 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 LLPHQ9BRT6 129 aaKnown RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 MLPHQ9BV36 600 aaPredicted RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 KLC2Q9H0B6 622 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 MMRN2Q9H8L6 949 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 DNAJB12Q9NXW2 375 aaKnown RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 SCHIP1Q9P0W5 487 aaPredicted RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 LRFN1Q9P244 771 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 LHX3Q9UBR4 397 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 HESX1Q9UBX0 185 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 TRPS1Q9UHF7 1281 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 ZNHIT2Q9UHR6 403 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 FBXO2Q9UK22 296 aaPredicted RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 ATP8A1Q9Y2Q0 1164 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 TMEM98Q9Y2Y6 226 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 MEMO1Q9Y316 297 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 PRKAB1Q9Y478 270 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 MFHAS1Q9Y4C4 1052 aa4.73□□□□□ -1.65
USP4-209ENST00000475873 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.73□□□□□ -1.65
USP4-209ENST00000475873 A8MX80 341 aa4.72□□□□□ -1.65
USP4-209ENST00000475873 E5RJQ4 531 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms