RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CHST15Q7LFX5 561 aaPredicted RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 ZNF653Q96CK0 615 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 AP2M1Q96CW1 435 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 SCARF2Q96GP6 870 aaPredicted RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 AHCYL2Q96HN2 611 aaKnown RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 ZNF599Q96NL3 588 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 CSPG4P5Q96PW8 444 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 MCCC1Q96RQ3 725 aaPredicted RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 WDR24Q96S15 920 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 MGME1Q9BQP7 344 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 DDA1Q9BW61 102 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 TBC1D10AQ9BXI6 508 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 B3GNT4Q9C0J1 378 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 CDH19Q9H159 772 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.05□□□□□ -1.12
VIM-202ENST00000421459 DONSONQ9NYP3 566 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 ANKMY1Q9P2S6 941 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 TBC1D29Q9UFV1 150 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 ZNHIT2Q9UHR6 403 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 CNOT6Q9ULM6 557 aaKnown RBP8.05□□□□□ -1.12
VIM-202ENST00000421459 KCNK6Q9Y257 313 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 CHKBQ9Y259 395 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 PLAAQ9Y263 795 aa8.05□□□□□ -1.12
VIM-202ENST00000421459 B4E171 279 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 H3BRJ5 948 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 FZD6O60353 706 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 DNAJC6O75061 913 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 FURINP09958 794 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 ZNF28P17035 718 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 DESP17661 470 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 IL4RP24394 825 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 TSPAN7P41732 249 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 CCR10P46092 362 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 FOXK1P85037 733 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 MC2RQ01718 297 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 MYL5Q02045 173 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 DPTQ07507 201 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 NIPAL4Q0D2K0 466 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 ASIC2Q16515 512 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 DPYSL2Q16555 572 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 ATP13A4Q4VNC1 1196 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.04□□□□□ -1.12
VIM-202ENST00000421459 MARC1Q5VT66 337 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 TMCO3Q6UWJ1 677 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 RBM43Q6ZSC3 357 aaKnown RBP8.04□□□□□ -1.12
VIM-202ENST00000421459 USP45Q70EL2 814 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 ARHGAP22Q7Z5H3 698 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 LURAP1LQ8IV03 231 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 SFRP1Q8N474 314 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 ATPAF2Q8N5M1 289 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 LZTR1Q8N653 840 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 AOPEPQ8N6M6 819 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 SPOCK2Q92563 424 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 ABHD17AQ96GS6 310 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 COX14Q96I36 57 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 SLC45A3Q96JT2 553 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 GPN2Q9H9Y4 310 aaPredicted RBP8.04□□□□□ -1.12
VIM-202ENST00000421459 PCDH18Q9HCL0 1135 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 DTLQ9NZJ0 730 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 PDP2Q9P2J9 529 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 PPIL1Q9Y3C6 166 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 SDK2Q58EX2 2172 aa8.04□□□□□ -1.12
VIM-202ENST00000421459 FLNCQ14315 2725 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 A0A0J9YYE9 177 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 ZNF891A8MT65 544 aaPredicted RBP8.03□□□□□ -1.12
VIM-202ENST00000421459 FADS2P1A8MWK0 482 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 EIF3CLB5ME19 914 aaKnown RBP8.03□□□□□ -1.12
VIM-202ENST00000421459 PSMD11O00231 422 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 ZW10O43264 779 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 STK17BO94768 372 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 PRLP01236 227 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 TRBC1P01850 177 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 ACP5P13686 325 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 TEAD1P28347 426 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 ARL4AP40617 200 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 FASLGP48023 281 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 STC1P52823 247 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 GFERP55789 205 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 SH3BP2P78314 561 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 HHEXQ03014 270 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 CDC20Q12834 499 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 CLPPQ16740 277 aaPredicted RBP8.03□□□□□ -1.12
VIM-202ENST00000421459 IYDQ6PHW0 289 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 SASS6Q6UVJ0 657 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 KDELC2Q7Z4H8 507 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 TMEM135Q86UB9 458 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 GALNT13Q8IUC8 556 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 NLGN4XQ8N0W4 816 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 TEX26Q8N6G2 289 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 CCDC112Q8NEF3 446 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 NLGN4YQ8NFZ3 816 aaPredicted RBP8.03□□□□□ -1.12
VIM-202ENST00000421459 OR10G6Q8NH81 332 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 C9orf43Q8TAL5 461 aaPredicted RBP8.03□□□□□ -1.12
VIM-202ENST00000421459 ELMO2Q96JJ3 720 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 EIF3CQ99613 913 aaKnown RBP8.03□□□□□ -1.12
VIM-202ENST00000421459 ASPSCR1Q9BZE9 553 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 ADNPQ9H2P0 1102 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 PRDM8Q9NQV8 689 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 OGFRQ9NZT2 677 aa8.03□□□□□ -1.12
VIM-202ENST00000421459 SCHIP1Q9P0W5 487 aaPredicted RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms