RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 KLHL38Q2WGJ6 581 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 TMEM259Q4ZIN3 620 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 SETMARQ53H47 684 aaPredicted RBP17.98■□□□□ 0.47
SDC1-203ENST00000403076 MRNIPQ6NTE8 343 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 TRIM69Q86WT6 500 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 PPM1NQ8N819 430 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 C6orf106Q9H6K1 298 aaPredicted RBP17.98■□□□□ 0.47
SDC1-203ENST00000403076 CRLS1Q9UJA2 301 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 PLAAQ9Y263 795 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 TRPM6Q9BX84 2022 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 CACNA1IQ9P0X4 2223 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 FAM86C2PA6NEL3 165 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 FAM159BA6NKW6 160 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 POC1B-GALNT4F8VUJ3 575 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 SLC31A1O15431 190 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 UGT1A9O60656 530 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 UGT1A6P19224 532 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 UGT1A1P22309 533 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 UGT1A4P22310 534 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 PMLP29590 882 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 UGT1A3P35503 534 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 UGT1A5P35504 534 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 CREB5Q02930 508 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 ITGA9Q13797 1035 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 CASP8Q14790 479 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 KIAA0895LQ68EN5 471 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 ZNF470Q6ECI4 717 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 ZNF449Q6P9G9 518 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 ZNF765Q7L2R6 523 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 HDXQ7Z353 690 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 SNX20Q7Z614 316 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 ZSCAN5AQ9BUG6 496 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 FUT8Q9BYC5 575 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 UGT1A7Q9HAW7 530 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 UGT1A10Q9HAW8 530 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 UGT1A8Q9HAW9 530 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 TXNDC16Q9P2K2 825 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 NFKBIL1Q9UBC1 381 aaPredicted RBP17.98■□□□□ 0.47
SDC1-203ENST00000403076 IKBKGQ9Y6K9 419 aa17.98■□□□□ 0.47
SDC1-203ENST00000403076 CCDC163A0A0D9SF12 145 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 PRSS56P0CW18 603 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 FOXN2P32314 431 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 GPR1P46091 355 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 CTBP1Q13363 440 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 NFATC2Q13469 925 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 EFTUD2Q15029 972 aaKnown RBP eCLIP17.97■□□□□ 0.478e-9■■■■■ 27
SDC1-203ENST00000403076 LRRC14Q15048 493 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 GPR33Q49SQ1 333 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 AARS2Q5JTZ9 985 aaKnown RBP17.97■□□□□ 0.47
SDC1-203ENST00000403076 TEDDM1Q5T9Z0 273 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 RAET1GQ6H3X3 334 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 SLC36A4Q6YBV0 504 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 LRRC6Q86X45 466 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 LMNTD2Q8IXW0 634 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 TRAM1L1Q8N609 369 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 OR2W6PQ8NHA6 318 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 SGSM3Q96HU1 749 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 AGAP2Q99490 1192 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 TTC1Q99614 292 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 SMYD2Q9NRG4 433 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 NSMCE4AQ9NXX6 385 aa17.97■□□□□ 0.47
SDC1-203ENST00000403076 MARCH4Q9P2E8 410 aaPredicted RBP17.97■□□□□ 0.47
SDC1-203ENST00000403076 CXorf49A8MYA2 514 aaPredicted RBP17.96■□□□□ 0.47
SDC1-203ENST00000403076 GAPDHSO14556 408 aaPredicted RBP17.96■□□□□ 0.47
SDC1-203ENST00000403076 PFDN6O15212 129 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 SHBGP04278 402 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 PCCBP05166 539 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 NUDT17P0C025 328 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 PPARGP37231 505 aaPredicted RBP17.96■□□□□ 0.47
SDC1-203ENST00000403076 MSH2P43246 934 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 CDKN1CP49918 316 aaPredicted RBP17.96■□□□□ 0.47
SDC1-203ENST00000403076 CCR5P51681 352 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 RPL6Q02878 288 aaKnown RBP17.96■□□□□ 0.47
SDC1-203ENST00000403076 FGL2Q14314 439 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 AGERQ15109 404 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 ATP13A5Q4VNC0 1218 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 HENMT1Q5T8I9 393 aaKnown RBP17.96■□□□□ 0.47
SDC1-203ENST00000403076 PSAPL1Q6NUJ1 521 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 LDB1Q86U70 411 aaPredicted RBP17.96■□□□□ 0.47
SDC1-203ENST00000403076 LONP2Q86WA8 852 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 DENND6AQ8IWF6 608 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 GPR150Q8NGU9 434 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 GDAP1Q8TB36 358 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 ASB12Q8WXK4 309 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 SNX19Q92543 992 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 MYOCQ99972 504 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 COL25A1Q9BXS0 654 aaPredicted RBP17.96■□□□□ 0.47
SDC1-203ENST00000403076 VPS18Q9P253 973 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 SLC17A6Q9P2U8 582 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 FBXO5Q9UKT4 447 aa17.96■□□□□ 0.47
SDC1-203ENST00000403076 GPR39O43194 453 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 PYGLP06737 847 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 IVLP07476 585 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 DPTQ07507 201 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 NAB1Q13506 487 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 WSCD2Q2TBF2 565 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 WDR5BQ86VZ2 330 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 NLRP8Q86W28 1048 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 SERPINA9Q86WD7 417 aa17.95■□□□□ 0.46
SDC1-203ENST00000403076 DEFB119Q8N690 84 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms