RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 LAMB3Q13751 1172 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 CYLC2Q14093 348 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 AFTPHQ6ULP2 937 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 CHST9Q7L1S5 443 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 GRIN3AQ8TCU5 1115 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 EEF1AKMT1Q8WVE0 214 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 ASIC4Q96FT7 647 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 CDRT15Q96T59 188 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 HBEGFQ99075 208 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 LINC00597Q9H2U6 94 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 IL1RL2Q9HB29 575 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 SLCO3A1Q9UIG8 710 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 TRMT6Q9UJA5 497 aaKnown RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 SLC4A7Q9Y6M7 1214 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 DOCK4Q8N1I0 1966 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 FRMPD3Q5JV73 1810 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 TTC28Q96AY4 2481 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 TRAV19A0A0A6YYK7 116 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 CCDC189A1A4V9 331 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 LEFTY2O00292 366 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 CD1DP15813 335 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 CCR2P41597 374 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 POLD2P49005 469 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 AGTR2P50052 363 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 ZNF140P52738 457 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 BTKQ06187 659 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 RAD51Q06609 339 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 TBCCQ15814 346 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 PREPLQ4J6C6 727 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 PTRHD1Q6GMV3 140 aaKnown RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 GK5Q6ZS86 529 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 TMEM25Q86YD3 366 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 MYLK4Q86YV6 388 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 PCDH20Q8N6Y1 951 aaKnown RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 FAM156AQ8NDB6 213 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 BADQ92934 168 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 TADA1Q96BN2 335 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 TRMT2BQ96GJ1 504 aaKnown RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 AARSD1Q9BTE6 412 aaKnown RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 HERC2P3Q9BVR0 1158 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 ASB8Q9H765 288 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 ARIH1Q9Y4X5 557 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 PTPRZ1P23471 2315 aaPredicted RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 UBFD1O14562 309 aaKnown RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 FGBP02675 491 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 ADH1AP07327 375 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 PPM1AP35813 382 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 PFKPQ01813 784 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 NAA25Q14CX7 972 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 KIF19Q2TAC6 998 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 C5orf22Q49AR2 442 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 AGKQ53H12 422 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 NECAB2Q7Z6G3 386 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 ZNF366Q8N895 744 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 OR9I1Q8NGQ6 314 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 CEP70Q8NHQ1 597 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 SORCS1Q8WY21 1168 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 FATE1Q969F0 183 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 ZNF333Q96JL9 665 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 SLC45A3Q96JT2 553 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 CNDP1Q96KN2 507 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 BOCQ9BWV1 1114 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 APOL5Q9BWW9 433 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 STN1Q9H668 368 aaKnown RBP11.09□□□□□ -0.63
TCOF1-203ENST00000394269 CD274Q9NZQ7 290 aa11.09□□□□□ -0.63
TCOF1-203ENST00000394269 SPTBN2O15020 2390 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 A0A088AWK7 358 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 TLL1O43897 1013 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 VPS26AO75436 327 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 GLUD1P00367 558 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 CYBBP04839 570 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 LINC00032P0C843 101 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 EEF1DP29692 281 aaKnown RBP11.08□□□□□ -0.64
TCOF1-203ENST00000394269 RFTN1Q14699 578 aaPredicted RBP11.08□□□□□ -0.64
TCOF1-203ENST00000394269 NCEH1Q6PIU2 408 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 FBXO39Q8N4B4 442 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 AFAP1L2Q8N4X5 818 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 LINGO1Q96FE5 620 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 MYO19Q96H55 970 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 RSRC1Q96IZ7 334 aaKnown RBP11.08□□□□□ -0.64
TCOF1-203ENST00000394269 ZDHHC6Q9H6R6 413 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 ADA2Q9NZK5 511 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 LHX3Q9UBR4 397 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 IKZF3Q9UKT9 509 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 SORCS3Q9UPU3 1222 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 COPG1Q9Y678 874 aaKnown RBP11.08□□□□□ -0.64
TCOF1-203ENST00000394269 SNX2O60749 519 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 PRAMEF1O95521 474 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 EFEMP2O95967 443 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 THRAP10827 490 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 PKMP14618 531 aaKnown RBP11.08□□□□□ -0.64
TCOF1-203ENST00000394269 ITGAXP20702 1163 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 FDXRP22570 491 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 CPOXP36551 454 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 FOXA1P55317 472 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 SH3BP2P78314 561 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 TIAL1Q01085 375 aaKnown RBP eCLIP11.08□□□□□ -0.64
TCOF1-203ENST00000394269 TEAD2Q15562 447 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 TSPAN33Q86UF1 283 aa11.08□□□□□ -0.64
TCOF1-203ENST00000394269 SLC22A9Q8IVM8 553 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms