RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 N4BP2L1Q5TBK1 243 aaPredicted RBP18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 DSG4Q86SJ6 1040 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 CSGALNACT1Q8TDX6 532 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 PTCD3Q96EY7 689 aaKnown RBP18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 GAS2L1Q99501 681 aaPredicted RBP18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 MMADHCQ9H3L0 296 aaPredicted RBP18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 POMKQ9H5K3 350 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 SUDS3Q9H7L9 328 aaPredicted RBP18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 POPDC3Q9HBV1 291 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 FKBPLQ9UIM3 349 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 TRIM33Q9UPN9 1127 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 STK38LQ9Y2H1 464 aa18.14■□□□□ 0.49
CCDC88C-203ENST00000389856 TSPAN11A1L157 253 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 CCL22O00626 93 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 HGSO14964 777 aaPredicted RBP18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 NPC1O15118 1278 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 LMNAP02545 664 aaKnown RBP18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 SERPINE1P05121 402 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 ZNF30P17039 623 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 ITGALP20701 1170 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 IGFBP4P22692 258 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 SLC26A3P40879 764 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 GRIA2P42262 883 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 SLC6A11P48066 632 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 ARHGEF7Q14155 803 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 GAB4Q2WGN9 574 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 ZRANB3Q5FWF4 1079 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 CNSTQ6PJW8 725 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 SLC41A1Q8IVJ1 513 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 ARHGAP24Q8N264 748 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 SMRP1Q8NCR6 262 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 PPP1R14CQ8TAE6 165 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 RDH11Q8TC12 318 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 GRIN3AQ8TCU5 1115 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 SORCS1Q8WY21 1168 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 OR8D1Q8WZ84 308 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 KLHL32Q96NJ5 620 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 BTBD10Q9BSF8 475 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 TBC1D10AQ9BXI6 508 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 NOP53Q9NZM5 478 aaKnown RBP18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 SUN2Q9UH99 717 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 VWA7Q9Y334 891 aa18.13■□□□□ 0.49
CCDC88C-203ENST00000389856 OR51F1A6NGY5 319 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 H2AFYO75367 372 aaKnown RBP18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 SERPINB3P29508 390 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 SPAM1P38567 509 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 ABCG1P45844 678 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 SUOXP51687 545 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 DLX2Q07687 328 aaPredicted RBP18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 PTPRCAPQ14761 206 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 HNRNPA1L2Q32P51 320 aaKnown RBP18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 ZNF805Q5CZA5 627 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 HECTD2Q5U5R9 776 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 KLC3Q6P597 504 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 PARM1Q6UWI2 310 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 CLEC14AQ86T13 490 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 WDR75Q8IWA0 830 aaKnown RBP18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 CHST14Q8NCH0 376 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 SUSD6Q92537 303 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 UTP4Q969X6 686 aaKnown RBP18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 PPP1R16AQ96I34 528 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 OMDQ99983 421 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 BRD9Q9H8M2 597 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 CAB39LQ9H9S4 337 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 EBF2Q9HAK2 575 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 MARCH4Q9P2E8 410 aaPredicted RBP18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 WASF2Q9Y6W5 498 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 FCHO1O14526 889 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 CBX6O95503 412 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 PROCP04070 461 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 PTGER3P43115 390 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 CSRP3P50461 194 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 ELAVL3Q14576 367 aaKnown RBP18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 FAM83EQ2M2I3 478 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 GPR33Q49SQ1 333 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 ARSIQ5FYB1 569 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 PPM1JQ5JR12 505 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 ERAP2Q6P179 960 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 LONP2Q86WA8 852 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 FGF14Q92915 247 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 PBXIP1Q96AQ6 731 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 PLA2G2FQ9BZM2 168 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 BPIFA1Q9NP55 256 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 PKD2L2Q9NZM6 624 aa18.12■□□□□ 0.49
CCDC88C-203ENST00000389856 OTOL1A6NHN0 477 aaPredicted RBP18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 UPK3BL1B0FP48 263 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 PRRT4C9JH25 899 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 UPK3BL2E5RIL1 263 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 LEFTY1O75610 366 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 KAT7O95251 611 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 PYGLP06737 847 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 VIPR1P32241 457 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 LTBRP36941 435 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 OPRD1P41143 372 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 PRKAA2P54646 552 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 TAS2R39P59534 338 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 ASPHQ12797 758 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 GRIN2CQ14957 1233 aa18.11■□□□□ 0.49
CCDC88C-203ENST00000389856 AGAP9Q5VTM2 703 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms