RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 LAS1LQ9Y4W2 734 aaKnown RBP-0.74□□□□□ -2.53
RNU6-540P-201ENST00000384622 A0A0C4DFX4 3053 aa-0.74□□□□□ -2.53
RNU6-540P-201ENST00000384622 NBPF19A0A087WUL8 3843 aa-0.74□□□□□ -2.53
RNU6-540P-201ENST00000384622 TCRBV7S3A2A0A539 114 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 FOXE1O00358 373 aaPredicted RBP-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 PDXKO00764 312 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 PLXNB1O43157 2135 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 PLRG1O43660 514 aaKnown RBP-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 DEDDO75618 318 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 RFPL3O75679 317 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 SP9P0CG40 484 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 GIFP27352 417 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 DCTDP32321 178 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 ISL1P61371 349 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 CREB5Q02930 508 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 PTK2BQ14289 1009 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 CCDC96Q2M329 555 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 MOGAT2Q3SYC2 334 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 C2orf27AQ580R0 203 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 FAM90A2PQ658T7 463 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 RHBDD2Q6NTF9 364 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZNF836Q6ZNA1 936 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 KRT28Q7Z3Y7 464 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 PPM1KQ8N3J5 372 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 TDRD7Q8NHU6 1098 aaKnown RBP-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 IL31RAQ8NI17 732 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 SMCR8Q8TEV9 937 aaPredicted RBP-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 AGAP11Q8TF27 550 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 KBTBD7Q8WVZ9 684 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 LINGO1Q96FE5 620 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 MPHOSPH8Q99549 860 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 RTP3Q9BQQ7 232 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 ING2Q9H160 280 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 IKZF5Q9H5V7 419 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 NOD2Q9HC29 1040 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 VTA1Q9NP79 307 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 SERINC1Q9NRX5 453 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 RXFP3Q9NSD7 469 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 MCM9Q9NXL9 1143 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 ARMCX3Q9UH62 379 aaPredicted RBP-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 PLEKHA6Q9Y2H5 1048 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 NSD2O96028 1365 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 CSMD2Q7Z408 3487 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 CDC42BPBQ9Y5S2 1711 aa-0.75□□□□□ -2.53
RNU6-540P-201ENST00000384622 PRKDCP78527 4128 aaKnown RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 CAPN8A6NHC0 703 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZNF233A6NK53 670 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 AQP7P3A6NL99 342 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 PPP1R12AO14974 1030 aaPredicted RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 SLC22A2O15244 555 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 CA11O75493 328 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 SEC31AO94979 1220 aaKnown RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 IPO7O95373 1038 aaKnown RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 HRGP04196 525 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 RBMY1CP0DJD4 496 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 RNASE2P10153 161 aaKnown RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 GNAZP19086 355 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 PRKCHP24723 683 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 PTPN3P26045 913 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 TMEM50BP56557 158 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 CLDN6P56747 220 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 CBFBQ13951 182 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 UBE4AQ14139 1066 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 KIAA0141Q14154 515 aaPredicted RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 ARHGEF7Q14155 803 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 PLS1Q14651 629 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 LAGE3Q14657 143 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 RRS1Q15050 365 aaKnown RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 TEAD2Q15562 447 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 TGIF1Q15583 401 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 AAK1Q2M2I8 961 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 UTF1Q5T230 341 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 FAM171A1Q5VUB5 890 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 MZT2AQ6P582 158 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 TIPARPQ7Z3E1 657 aaKnown RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 AMOTL1Q8IY63 956 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 RAB42Q8N4Z0 105 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 CELF5Q8N6W0 485 aaKnown RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 OR52I2Q8NH67 350 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZNF519Q8TB69 540 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 MAGEC3Q8TD91 643 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 ARNTL2Q8WYA1 636 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 SPSB4Q96A44 273 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 COA7Q96BR5 231 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 RNF186Q9NXI6 227 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 THRAP3Q9Y2W1 955 aaKnown RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 KIF26AQ9ULI4 1882 aaPredicted RBP-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 MED13Q9UHV7 2174 aa-0.76□□□□□ -2.53
RNU6-540P-201ENST00000384622 PCNX2A6NKB5 2137 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 SLIT3O75094 1523 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 IGLV4-60A0A075B6I1 120 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 IGKV1-8A0A0C4DH67 115 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 A0A0U1RQV1 116 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 C11orf97A0A1B0GVM6 126 aaPredicted RBP-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 GLTPD2A6NH11 291 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZNF878C9JN71 531 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 BTN3A1O00481 513 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 ZBED4O75132 1171 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 KBTBD11O94819 623 aa-0.77□□□□□ -2.53
RNU6-540P-201ENST00000384622 NGFP01138 241 aa-0.77□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms