RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 UGT1A5P35504 534 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 CCT5P48643 541 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 TTPAP49638 278 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 SLC18A1P54219 525 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 SLC12A2P55011 1212 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 TAS2R39P59534 338 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 AARS2Q5JTZ9 985 aaKnown RBP26.7■■□□□ 1.86
MSX1-201ENST00000382723 ERN2Q76MJ5 926 aaKnown RBP26.7■■□□□ 1.86
MSX1-201ENST00000382723 CEP97Q8IW35 865 aa26.7■■□□□ 1.86
MSX1-201ENST00000382723 ATXN2LQ8WWM7 1075 aaKnown RBP26.7■■□□□ 1.86
MSX1-201ENST00000382723 TBRG4Q969Z0 631 aaKnown RBP eCLIP26.7■■□□□ 1.86
MSX1-201ENST00000382723 MID1O15344 667 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 SPINT1O43278 529 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 ADAM23O75077 832 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 MPOP05164 745 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 C2P06681 752 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 ELFN1P0C7U0 828 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 STMN1P16949 149 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 ITGALP20701 1170 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 CA5AP35218 305 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 WDR4P57081 412 aaKnown RBP26.69■■□□□ 1.86
MSX1-201ENST00000382723 IRF9Q00978 393 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 POU4F1Q01851 419 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 NFATC2Q13469 925 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 CST6Q15828 149 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 HECTD2Q5U5R9 776 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 SNX20Q7Z614 316 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 LPGAT1Q92604 370 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 FAM111AQ96PZ2 611 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 OLFM1Q99784 485 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 GABRG3Q99928 467 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 TLK1Q9UKI8 766 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 SHISA7A6NL88 538 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 TM9SF1O15321 606 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 OR1I1O60431 355 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 FMO4P31512 558 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 CRHR1P34998 444 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 ETV3P41162 512 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 P2RY2P41231 377 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 POLD2P49005 469 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 CNTN1Q12860 1018 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 STARD3Q14849 445 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 ZNF549Q6P9A3 640 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 LVRNQ6Q4G3 990 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 ZNF398Q8TD17 642 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 KCNV2Q8TDN2 545 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 MKS1Q9NXB0 559 aa26.69■■□□□ 1.86
MSX1-201ENST00000382723 NEMP1O14524 444 aa26.68■■□□□ 1.86
MSX1-201ENST00000382723 PFDN6O15212 129 aa26.68■■□□□ 1.86
MSX1-201ENST00000382723 HOXB2P14652 356 aa26.68■■□□□ 1.86
MSX1-201ENST00000382723 RAB10P61026 200 aa26.68■■□□□ 1.86
MSX1-201ENST00000382723 HHATQ5VTY9 493 aa26.68■■□□□ 1.86
MSX1-201ENST00000382723 LIPIQ6XZB0 460 aa26.68■■□□□ 1.86
MSX1-201ENST00000382723 Q6ZVL8 140 aa26.68■■□□□ 1.86
MSX1-201ENST00000382723 SERPINA9Q86WD7 417 aa26.68■■□□□ 1.86
MSX1-201ENST00000382723 NDRG2Q9UN36 371 aaKnown RBP26.68■■□□□ 1.86
MSX1-201ENST00000382723 VWA7Q9Y334 891 aa26.68■■□□□ 1.86
MSX1-201ENST00000382723 LIG3P49916 1009 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 PTPN5P54829 565 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 CDKN2DP55273 166 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 ELP6Q0PNE2 266 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 ACOX1Q15067 660 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 RNF187Q5TA31 235 aaPredicted RBP26.67■■□□□ 1.86
MSX1-201ENST00000382723 SPNS2Q8IVW8 549 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 CENPTQ96BT3 561 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 CABS1Q96KC9 395 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 PLEKHG4BQ96PX9 1271 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 HDAC8Q9BY41 377 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 CRLS1Q9UJA2 301 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 PLLPQ9Y342 182 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 COPAP53621 1224 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 DBN1Q16643 649 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 TAF1BQ53T94 588 aaPredicted RBP26.67■■□□□ 1.86
MSX1-201ENST00000382723 ZDHHC20Q5W0Z9 365 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 TRMT11Q7Z4G4 463 aaKnown RBP26.67■■□□□ 1.86
MSX1-201ENST00000382723 AADATQ8N5Z0 425 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 MAFAQ8NHW3 353 aaPredicted RBP26.67■■□□□ 1.86
MSX1-201ENST00000382723 SCG3Q8WXD2 468 aaKnown RBP26.67■■□□□ 1.86
MSX1-201ENST00000382723 SCAMP4Q969E2 229 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 DCDC2Q9UHG0 476 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 VPS9D1Q9Y2B5 631 aa26.67■■□□□ 1.86
MSX1-201ENST00000382723 AREL1O15033 823 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 DNAJC6O75061 913 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 GLRA3O75311 464 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 ASMTLO95671 621 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 SLC35E2BP0CK96 405 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 COL9A1P20849 921 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 CRABP2P29373 138 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 CSRP3P50461 194 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 MRPS21P82921 87 aaKnown RBP26.66■■□□□ 1.86
MSX1-201ENST00000382723 ZKSCAN8Q15776 578 aaPredicted RBP26.66■■□□□ 1.86
MSX1-201ENST00000382723 ZNF776Q68DI1 518 aaPredicted RBP26.66■■□□□ 1.86
MSX1-201ENST00000382723 FAM45BPQ6NSW5 357 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 C16orf46Q6P387 395 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 CERS6Q6ZMG9 384 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 PLD6Q8N2A8 252 aaKnown RBP26.66■■□□□ 1.86
MSX1-201ENST00000382723 OR2T3Q8NH03 318 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 RPLP0P6Q8NHW5 317 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 FAM45AQ8TCE6 357 aa26.66■■□□□ 1.86
MSX1-201ENST00000382723 FAM136AQ96C01 138 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms