RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 TCEAL3Q969E4 200 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 DTD2Q96FN9 168 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 CFAP36Q96G28 342 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 SLC6A18Q96N87 628 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 TCEAL2Q9H3H9 227 aaPredicted RBP4.01□□□□□ -1.77
LIG4-201ENST00000356922 CDC42EP4Q9H3Q1 356 aaKnown RBP4.01□□□□□ -1.77
LIG4-201ENST00000356922 NINJ2Q9NZG7 142 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 RAB21Q9UL25 225 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 PLEKHM1Q9Y4G2 1056 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 PRSS21Q9Y6M0 314 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 PLXNB3Q9ULL4 1909 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 SMG1Q96Q15 3661 aaKnown RBP4.01□□□□□ -1.77
LIG4-201ENST00000356922 ADAMTS9Q9P2N4 1935 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 FANCMQ8IYD8 2048 aa4.01□□□□□ -1.77
LIG4-201ENST00000356922 GALR2O43603 387 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 RPP40O75818 363 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 ACSL3O95573 720 aa4□□□□□ -1.77
LIG4-201ENST00000356922 MLNP12872 115 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ADRA1DP25100 572 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PSMA3P25788 255 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CSNK1EP49674 416 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 RPL26P61254 145 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 CDK16Q00536 496 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TIAL1Q01085 375 aaKnown RBP eCLIP4□□□□□ -1.77
LIG4-201ENST00000356922 ACVR1Q04771 509 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CALCOCO2Q13137 446 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CRYMQ14894 314 aa4□□□□□ -1.77
LIG4-201ENST00000356922 E2F5Q15329 346 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TAF1AQ15573 450 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 PCID2Q5JVF3 399 aa4□□□□□ -1.77
LIG4-201ENST00000356922 C3orf62Q6ZUJ4 267 aa4□□□□□ -1.77
LIG4-201ENST00000356922 USP45Q70EL2 814 aa4□□□□□ -1.77
LIG4-201ENST00000356922 LONP2Q86WA8 852 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ZNF547Q8IVP9 402 aa4□□□□□ -1.77
LIG4-201ENST00000356922 DCLK2Q8N568 766 aa4□□□□□ -1.77
LIG4-201ENST00000356922 LILRA3Q8N6C8 439 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 BEND7Q8N7W2 519 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 OR2T34Q8NGX1 318 aa4□□□□□ -1.77
LIG4-201ENST00000356922 AENQ8WTP8 325 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 FAM136AQ96C01 138 aa4□□□□□ -1.77
LIG4-201ENST00000356922 MRRFQ96E11 262 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 PPP1R16AQ96I34 528 aa4□□□□□ -1.77
LIG4-201ENST00000356922 NRTNQ99748 197 aa4□□□□□ -1.77
LIG4-201ENST00000356922 IL22Q9GZX6 179 aa4□□□□□ -1.77
LIG4-201ENST00000356922 RAB17Q9H0T7 212 aa4□□□□□ -1.77
LIG4-201ENST00000356922 NLE1Q9NVX2 485 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 MOCS1Q9NZB8 636 aa4□□□□□ -1.77
LIG4-201ENST00000356922 BFARQ9NZS9 450 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SOX13Q9UN79 622 aa4□□□□□ -1.77
LIG4-201ENST00000356922 RPL26L1Q9UNX3 145 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 MED16Q9Y2X0 877 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ATMQ13315 3056 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PIKFYVEQ9Y2I7 2098 aa4□□□□□ -1.77
LIG4-201ENST00000356922 MGAQ8IWI9 3026 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ASCC3Q8N3C0 2202 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 A0A1W2PPC4 97 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TCRBV9S1A1TA0A576 114 aa4□□□□□ -1.77
LIG4-201ENST00000356922 GOLGA6CA6NDK9 693 aa4□□□□□ -1.77
LIG4-201ENST00000356922 GOLGA6BA6NDN3 693 aa4□□□□□ -1.77
LIG4-201ENST00000356922 AGAP14A8MT82 685 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TSPAN6O43657 245 aa4□□□□□ -1.77
LIG4-201ENST00000356922 LILRB5O75023 590 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ALDH1A2O94788 518 aa4□□□□□ -1.77
LIG4-201ENST00000356922 HAUS5O94927 633 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PCCBP05166 539 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CELA2BP08218 269 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 GOLGA6DP0CG33 693 aa4□□□□□ -1.77
LIG4-201ENST00000356922 LPOP22079 712 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 TRIM23P36406 574 aa4□□□□□ -1.77
LIG4-201ENST00000356922 NPY2RP49146 381 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CBLBQ13191 982 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SLC29A2Q14542 456 aa4□□□□□ -1.77
LIG4-201ENST00000356922 GRM3Q14832 879 aa4□□□□□ -1.77
LIG4-201ENST00000356922 TTC31Q49AM3 519 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 USP39Q53GS9 565 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 SETMARQ53H47 684 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 WDR93Q6P2C0 686 aa4□□□□□ -1.77
LIG4-201ENST00000356922 C4orf22Q6V702 233 aa4□□□□□ -1.77
LIG4-201ENST00000356922 LINC00523Q86TU6 105 aa4□□□□□ -1.77
LIG4-201ENST00000356922 WDR5BQ86VZ2 330 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SPATS2Q86XZ4 545 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 IFT20Q8IY31 132 aa4□□□□□ -1.77
LIG4-201ENST00000356922 PDIK1LQ8N165 341 aa4□□□□□ -1.77
LIG4-201ENST00000356922 MYRIPQ8NFW9 859 aa4□□□□□ -1.77
LIG4-201ENST00000356922 OR13H1Q8NG92 308 aa4□□□□□ -1.77
LIG4-201ENST00000356922 CCL4L1Q8NHW4 92 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ZNF669Q96BR6 464 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 AP2M1Q96CW1 435 aa4□□□□□ -1.77
LIG4-201ENST00000356922 RUNDC3BQ96NL0 473 aa4□□□□□ -1.77
LIG4-201ENST00000356922 FMO2Q99518 471 aa4□□□□□ -1.77
LIG4-201ENST00000356922 MIR1-1HGQ9H1L0 117 aa4□□□□□ -1.77
LIG4-201ENST00000356922 FAM83DQ9H4H8 585 aa4□□□□□ -1.77
LIG4-201ENST00000356922 GOLGA6AQ9NYA3 693 aa4□□□□□ -1.77
LIG4-201ENST00000356922 SLC23A2Q9UGH3 650 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ZC3H7BQ9UGR2 993 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 FAM169AQ9Y6X4 670 aa4□□□□□ -1.77
LIG4-201ENST00000356922 NBEAQ8NFP9 2946 aa4□□□□□ -1.77
LIG4-201ENST00000356922 ARHGEF17Q96PE2 2063 aaPredicted RBP4□□□□□ -1.77
LIG4-201ENST00000356922 DSPP15924 2871 aaKnown RBP4□□□□□ -1.77
LIG4-201ENST00000356922 A0A1W2PR77 199 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms