RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PPARGP37231 505 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 PTGER3P43115 390 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 CCT5P48643 541 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 WDR4P57081 412 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 TAS2R39P59534 338 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 RAB10P61026 200 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 CBX1P83916 185 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 SATB1Q01826 763 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 ZBTB16Q05516 673 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 GABPB1Q06547 395 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 ITIH4Q14624 930 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 USP10Q14694 798 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 STARD3Q14849 445 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 CST6Q15828 149 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 DBN1Q16643 649 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 SLC44A4Q53GD3 710 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 ZNF776Q68DI1 518 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 SDE2Q6IQ49 451 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 PSAPL1Q6NUJ1 521 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 KYAT3Q6YP21 454 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 NLRP8Q86W28 1048 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 ADHFE1Q8IWW8 467 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 GPR26Q8NDV2 337 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 COQ10AQ96MF6 247 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 KLF6Q99612 283 aaPredicted RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 AARSD1Q9BTE6 412 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 CAPS2Q9BXY5 557 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 P2RY12Q9H244 342 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 KCNK9Q9NPC2 374 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 DYRK4Q9NR20 520 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 PCMTD2Q9NV79 361 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 DCDC2Q9UHG0 476 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 SLC39A10Q9ULF5 831 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 SCML1Q9UN30 329 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 PLLPQ9Y342 182 aa14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 TCF20Q9UGU0 1960 aaKnown RBP14.85□□□□□ -0.03
CCDC88C-202ENST00000334448 IGLV3-16A0A075B6K0 115 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 A0A096LPK6 155 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 A0A0U1RQS6 177 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 A0A1W2PQF6 199 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 GOLGA8RI6L899 631 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 SYNCRIPO60506 623 aaKnown RBP14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 NDUFS3O75489 264 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 ESR1P03372 595 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 C2P06681 752 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 SLC35E2BP0CK96 405 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 STMN1P16949 149 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 GM2AP17900 193 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 FDXRP22570 491 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 DRD3P35462 400 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 TIE1P35590 1138 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 P2RY2P41231 377 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 ABCG1P45844 678 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 PSMD8P48556 350 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 METAP1P53582 386 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 COPAP53621 1224 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 PRKCQQ04759 706 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 CCDC15Q0P6D6 951 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 ITGA9Q13797 1035 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 MLF2Q15773 248 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 TAF1BQ53T94 588 aaPredicted RBP14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 ZRANB3Q5FWF4 1079 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 HENMT1Q5T8I9 393 aaKnown RBP14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 PIP5KL1Q5T9C9 394 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 HECTD2Q5U5R9 776 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 ZNF549Q6P9A3 640 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 FBXL19Q6PCT2 694 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 FAM151BQ6UXP7 276 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 LIPIQ6XZB0 460 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 RGS9BPQ6ZS82 235 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 CDHR3Q6ZTQ4 885 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 MICALCLQ6ZW33 695 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 HSD11B1LQ7Z5J1 315 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 CMC1Q7Z7K0 106 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 MMAAQ8IVH4 418 aaKnown RBP14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 ZNF687Q8N1G0 1237 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 NXPE1Q8N323 547 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 TRAM1L1Q8N609 369 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 TCP10LQ8TDR4 215 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 PPM1EQ8WY54 764 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 ULK4Q96C45 1275 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 TTC1Q99614 292 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 C1QTNF1Q9BXJ1 281 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 GRID1Q9ULK0 1009 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 VWA7Q9Y334 891 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 PCDHB1Q9Y5F3 818 aa14.84□□□□□ -0.03
CCDC88C-202ENST00000334448 A0A087X1B8 175 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 PRMT5O14744 637 aaPredicted RBP14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 F7P08709 466 aaPredicted RBP14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 ELFN1P0C7U0 828 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 PRSS56P0CW18 603 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 ACRV1P26436 265 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 RPS14P62263 151 aaKnown RBP14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 GUCY1A3Q02108 690 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 ZP2Q05996 745 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 AGERQ15109 404 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 CHRNA6Q15825 494 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 LRRC73Q5JTD7 316 aa14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 RBM20Q5T481 1227 aaKnown RBP14.83□□□□□ -0.04
CCDC88C-202ENST00000334448 IER5LQ5T953 404 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms