RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ARFGAP1Q8N6T3 406 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 AP2M1Q96CW1 435 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 SPRY4Q9C004 299 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 SARS2Q9NP81 518 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 HAUS2Q9NVX0 235 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 FANCLQ9NW38 375 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 LIMA1Q9UHB6 759 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 SCINQ9Y6U3 715 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 LRRC10BA6NIK2 292 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 PEX11BO96011 259 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 MPSTP25325 297 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 PCK1P35558 622 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 MMP13P45452 471 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 EPHA4P54764 986 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 HHEXQ03014 270 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 TRAF2Q12933 501 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 NCAPHQ15003 741 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 CYP4V2Q6ZWL3 525 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 KDELC2Q7Z4H8 507 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 EXD1Q8NHP7 514 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 SLC37A2Q8TED4 501 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 PTCD2Q8WV60 388 aaKnown RBP14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 HERPUD2Q9BSE4 406 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 LDHAL6BQ9BYZ2 381 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 ABCG8Q9H221 673 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 TMEM9Q9P0T7 183 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 VPS18Q9P253 973 aa14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 TMEM184BQ9Y519 407 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-201ENST00000301897 TTC24A2A3L6 582 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 CLEC18AA5D8T8 446 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 NKX2-8O15522 239 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 MAFKO60675 156 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 LRCH4O75427 683 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 MAP3K6O95382 1288 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 SOD1P00441 154 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 PRKAR1AP10644 381 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 GZMAP12544 262 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 CDK11BP21127 795 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 CA4P22748 312 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 CES1P23141 567 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 MAP7Q14244 749 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 DPYSL2Q16555 572 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 LACTB2Q53H82 288 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 BOLA3Q53S33 107 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 SNAP47Q5SQN1 464 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 CLEC18BQ6UXF7 455 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 IRF2BP2Q7Z5L9 587 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 SLC9B2Q86UD5 537 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 TSPAN33Q86UF1 283 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 PGBD5Q8N414 524 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 CLEC18CQ8NCF0 446 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 PIH1D2Q8WWB5 315 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 TRIM11Q96F44 468 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 COX14Q96I36 57 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 TAS2R14Q9NYV8 317 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 TMEM98Q9Y2Y6 226 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 KCTD3Q9Y597 815 aa14.67□□□□□ -0.06
CCDC88B-201ENST00000301897 KIR2DS5A0A0G2JLQ3 304 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 A0A0G2JNG1 304 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 LOC101059948A0A1B0GTJ6 334 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 OR5K4A6NMS3 321 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 TMCO5BA8MYB1 307 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 KIR2DS3K7RE56 304 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 POLR1CO15160 346 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 STK17BO94768 372 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 TCN2P20062 427 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 EPHB1P54762 984 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 MYL5Q02045 173 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 KIR2DS5Q14953 304 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 LRRC66Q68CR7 880 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 MARK2Q7KZI7 788 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 POLNQ7Z5Q5 900 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 PLXDC1Q8IUK5 500 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 FAM26EQ8N5C1 309 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 ESX1Q8N693 406 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 STARD8Q92502 1023 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 NCSTNQ92542 709 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 ABHD17AQ96GS6 310 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 SYT11Q9BT88 431 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 RMI1Q9H9A7 625 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 MRPL47Q9HD33 250 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 ZNF71Q9NQZ8 489 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 ZNHIT2Q9UHR6 403 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 PLEKHM1Q9Y4G2 1056 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 PCDHB3Q9Y5E6 796 aa14.66□□□□□ -0.06
CCDC88B-201ENST00000301897 UNC79Q9P2D8 2635 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 MYO9AB2RTY4 2548 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 PRRC2CQ9Y520 2896 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 A8MU76 341 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 ATMINO43313 823 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 ASMTLO95671 621 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 MYBL1P10243 752 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 CTPS1P17812 591 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 STAT5AP42229 794 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 STC1P52823 247 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 MAXP61244 160 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 PTSQ03393 145 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 KLRB1Q12918 225 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 IGFBP7Q16270 282 aa14.65□□□□□ -0.06
CCDC88B-201ENST00000301897 DEFB109BQ30KR1 87 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms