RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 SMAD1Q15797 465 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 SNAPC1Q16533 368 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 USP7Q93009 1102 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 RRNAD1Q96FB5 475 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 SNX18Q96RF0 628 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF436Q9C0F3 470 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 PUS7LQ9H0K6 701 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 GAREM1Q9H706 876 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 MTRRQ9UBK8 725 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ICKQ9UPZ9 632 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 RPL36Q9Y3U8 105 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 EMSYQ7Z589 1322 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ZFYVE16Q7Z3T8 1539 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 FAM196BA6NMK8 535 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 MID1O15344 667 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 MAPTP10636 758 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CKBP12277 381 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 MYCLP12524 364 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CDK2P24941 298 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 APLP1P51693 650 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 PTPN5P54829 565 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 NOMO3P69849 1222 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 NOMO1Q15155 1222 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 MED22Q15528 200 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 FSCN1Q16658 493 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 RBFAQ8N0V3 343 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 HASPINQ8TF76 798 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 PRCCQ92733 491 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 KCNN1Q92952 543 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ASB9Q96DX5 294 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 PTCHD1Q96NR3 888 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CAMK1GQ96NX5 476 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 OR5B12Q96R08 314 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 PHOX2BQ99453 314 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ADAM2Q99965 735 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ZBTB3Q9H5J0 574 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ACSS3Q9H6R3 686 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 LRRC4BQ9NT99 713 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 UXTQ9UBK9 157 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF214Q9UL59 606 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 A2MP01023 1474 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 FAM205CA6NFA0 338 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 FABP12A6NFH5 140 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 RNF212BA8MTL3 300 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 BHLHE40O14503 412 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ADAM12O43184 909 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CALCAP01258 141 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CCNIQ14094 377 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ARHGEF7Q14155 803 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 UBXN2BQ14CS0 331 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CERKLQ49MI3 558 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 NOMO2Q5JPE7 1267 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 SLC35F1Q5T1Q4 408 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 SSX9Q7RTT3 188 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 IQCKQ8N0W5 287 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ENDOVQ8N8Q3 282 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 NT5C1AQ9BXI3 368 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 GTF2IRD1Q9UHL9 959 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 GNG14A0A1W2PPG7 69 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 OR2B3O76000 313 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 HMGN1P05114 100 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CYP21A2P08686 494 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 VARSP26640 1264 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 PON1P27169 355 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CERS1P27544 350 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 SCNN1DP51172 638 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 PNLIPRP1P54315 467 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 GXYLT1Q4G148 440 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 PPP1R15BQ5SWA1 713 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ING5Q8WYH8 240 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 SLC7A6OSQ96CW6 309 aaPredicted RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CHP1Q99653 195 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 EIF3KQ9UBQ5 218 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 C17orf113A0A1B0GUU1 675 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 USP27XA6NNY8 438 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 RNH1P13489 461 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 DARSP14868 501 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CD81P60033 236 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CDKL1Q00532 357 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ZNF613Q6PF04 617 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 RAD9BQ6WBX8 426 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 DGLUCYQ7Z3D6 616 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 HID1Q8IV36 788 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CSGALNACT1Q8TDX6 532 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 DPY30Q9C005 99 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 XPNPEP3Q9NQH7 507 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 DNAJC16Q9Y2G8 782 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 PADI2Q9Y2J8 665 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CAPN6Q9Y6Q1 641 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 H3BNH8 94 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CDC7O00311 574 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 ENTPD5O75356 428 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 DGKQP52824 942 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 LRRN1Q6UXK5 716 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 BRSK2Q8IWQ3 736 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 RPLP0P6Q8NHW5 317 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 SPPL2AQ8TCT8 520 aa4.83□□□□□ -1.64
CSMD3-201ENST00000297405 CNDP2Q96KP4 475 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 TRIT1Q9H3H1 467 aaKnown RBP4.83□□□□□ -1.64
CSMD3-201ENST00000297405 NT5DC2Q9H857 520 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms