RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 MAGED1Q9Y5V3 778 aaPredicted RBP21.23■□□□□ 0.99
TRIM28-201ENST00000253024 GUCA1CO95843 209 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 RHOQP17081 205 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 HOXC13P31276 330 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 ZRANB3Q5FWF4 1079 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 SAMD4BQ5PRF9 694 aaKnown RBP21.23■□□□□ 0.99
TRIM28-201ENST00000253024 SLC22A9Q8IVM8 553 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 PBXIP1Q96AQ6 731 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 MUC3BQ9H195 1237 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 SPC25Q9HBM1 224 aa21.23■□□□□ 0.99
TRIM28-201ENST00000253024 INTS7Q9NVH2 962 aaKnown RBP21.23■□□□□ 0.99
TRIM28-201ENST00000253024 ECI2O75521 394 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 HSPA1AP0DMV8 641 aaKnown RBP21.22■□□□□ 0.99
TRIM28-201ENST00000253024 HSPA1BP0DMV9 641 aaKnown RBP21.22■□□□□ 0.99
TRIM28-201ENST00000253024 CLCQ05315 142 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 MAPRE2Q15555 327 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 MAPRE1Q15691 268 aaKnown RBP21.22■□□□□ 0.99
TRIM28-201ENST00000253024 TAS2R42Q7RTR8 314 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 ABTB1Q969K4 478 aaPredicted RBP21.22■□□□□ 0.99
TRIM28-201ENST00000253024 POLR1EQ9GZS1 481 aaKnown RBP21.22■□□□□ 0.99
TRIM28-201ENST00000253024 MFSD1Q9H3U5 465 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 EIF2B4Q9UI10 523 aaKnown RBP21.22■□□□□ 0.99
TRIM28-201ENST00000253024 ZNF236Q9UL36 1845 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 MOXD2PA6NHM9 499 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 SLC7A4O43246 635 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 DNAJB2P25686 324 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 SGSHP51688 502 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 PSAPL1Q6NUJ1 521 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 KIAA0408Q6ZU52 694 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 GLT6D1Q7Z4J2 308 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 RAB44Q7Z6P3 723 aaPredicted RBP21.22■□□□□ 0.99
TRIM28-201ENST00000253024 DENND1CQ8IV53 801 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 UMODL1-AS1Q8N2C9 162 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 MIER2Q8N344 545 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 OR52B6Q8NGF0 335 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 CDKN2AIPNLQ96HQ2 116 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 LTB4R2Q9NPC1 389 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 PRDM5Q9NQX1 630 aaPredicted RBP21.22■□□□□ 0.99
TRIM28-201ENST00000253024 TMEM181Q9P2C4 612 aa21.22■□□□□ 0.99
TRIM28-201ENST00000253024 SMIM31A0A1B0GVY4 71 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 MROH6A6NGR9 719 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 TLR5O60602 858 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 NDUFS3O75489 264 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 CYP11A1P05108 521 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 MGAT3Q09327 533 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 SGO1Q5FBB7 561 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 MSANTD2Q6P1R3 559 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 PRSS55Q6UWB4 352 aaPredicted RBP21.21■□□□□ 0.99
TRIM28-201ENST00000253024 B3GNT6Q6ZMB0 384 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 CHERPQ8IWX8 916 aaKnown RBP21.21■□□□□ 0.99
TRIM28-201ENST00000253024 CATSPER1Q8NEC5 780 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 MAGEE2Q8TD90 523 aaPredicted RBP21.21■□□□□ 0.99
TRIM28-201ENST00000253024 CCDC126Q96EE4 140 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 MRPS26Q9BYN8 205 aaKnown RBP21.21■□□□□ 0.99
TRIM28-201ENST00000253024 CD300AQ9UGN4 299 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 DHRS12A0PJE2 317 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 MAGEB3O15480 346 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 PYGLP06737 847 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 SLC6A4P31645 630 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 RPS6KA3P51812 740 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 RFTN1Q14699 578 aaPredicted RBP21.21■□□□□ 0.99
TRIM28-201ENST00000253024 AFMIDQ63HM1 303 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 FAM45BPQ6NSW5 357 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 MRNIPQ6NTE8 343 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 OR2T34Q8NGX1 318 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 OR2T3Q8NH03 318 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 FAM45AQ8TCE6 357 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 PTCD2Q8WV60 388 aaKnown RBP21.21■□□□□ 0.99
TRIM28-201ENST00000253024 SLC39A13Q96H72 371 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 VPS50Q96JG6 964 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 PPM1MQ96MI6 270 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 SMOXQ9NWM0 555 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 FKBPLQ9UIM3 349 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 ZMYM5Q9UJ78 669 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 VPS28Q9UK41 221 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 NUP214P35658 2090 aaPredicted RBP21.21■□□□□ 0.99
TRIM28-201ENST00000253024 B4GAT1O43505 415 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 GALK1P51570 392 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 RNF19BQ6ZMZ0 732 aa21.21■□□□□ 0.99
TRIM28-201ENST00000253024 TMEM173Q86WV6 379 aaPredicted RBP21.21■□□□□ 0.99
TRIM28-201ENST00000253024 ZFP37Q9Y6Q3 630 aaPredicted RBP21.21■□□□□ 0.99
TRIM28-201ENST00000253024 OR4F21O95013 312 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 GJB5O95377 273 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 CTPS1P17812 591 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 HOXC8P31273 242 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 ZNF135P52742 658 aaPredicted RBP21.2■□□□□ 0.98
TRIM28-201ENST00000253024 HK2P52789 917 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 CAP1Q01518 475 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 NRG1Q02297 640 aaPredicted RBP21.2■□□□□ 0.98
TRIM28-201ENST00000253024 ARHGAP22Q7Z5H3 698 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 EPHX4Q8IUS5 362 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 CMTR2Q8IYT2 770 aaKnown RBP21.2■□□□□ 0.98
TRIM28-201ENST00000253024 AHI1Q8N157 1196 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 PCYOX1LQ8NBM8 494 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 MDGA1Q8NFP4 955 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 OR10Q1Q8NGQ4 319 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 EEF1AKMT1Q8WVE0 214 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 RMND5BQ96G75 393 aaPredicted RBP21.2■□□□□ 0.98
TRIM28-201ENST00000253024 EI24O14681 340 aa21.2■□□□□ 0.98
TRIM28-201ENST00000253024 BNIP3LO60238 219 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms