RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 AHCYL2Q96HN2 611 aaKnown RBP19.33■□□□□ 0.68
CLN3-262ENST00000637699 ZNF599Q96NL3 588 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 DPYSL5Q9BPU6 564 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 ZNF71Q9NQZ8 489 aaPredicted RBP19.33■□□□□ 0.68
CLN3-262ENST00000637699 LMBRD1Q9NUN5 540 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 CWC15Q9P013 229 aaKnown RBP19.33■□□□□ 0.68
CLN3-262ENST00000637699 CD84Q9UIB8 345 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 TUBD1Q9UJT1 453 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 RELNP78509 3460 aa19.33■□□□□ 0.68
CLN3-262ENST00000637699 LRRK2Q5S007 2527 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 A8MU76 341 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 B4E171 279 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 RNF8O76064 485 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 PRKAR1AP10644 381 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 CTPS1P17812 591 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 TNFAIP3P21580 790 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 NFKBIAP25963 317 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 MIPP30301 263 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 TSPAN7P41732 249 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 UBXN1Q04323 297 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 TRAF2Q12933 501 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 SNAP47Q5SQN1 464 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 RFLNAQ6ZTI6 216 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 CYP4V2Q6ZWL3 525 aaPredicted RBP19.32■□□□□ 0.68
CLN3-262ENST00000637699 FNIP1Q8TF40 1166 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 CATSPER2Q96P56 530 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 OR2M4Q96R27 311 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 NUDCD1Q96RS6 583 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 SLC38A3Q99624 504 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 CTRCQ99895 268 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 TRIM7Q9C029 511 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 GPN2Q9H9Y4 310 aaPredicted RBP19.32■□□□□ 0.68
CLN3-262ENST00000637699 PILRAQ9UKJ1 303 aa19.32■□□□□ 0.68
CLN3-262ENST00000637699 LGALS16A8MUM7 142 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 DUX1O43812 170 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 PEX11BO96011 259 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 FERP16591 822 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 CR2P20023 1033 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 TEAD1P28347 426 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 RAB15P59190 212 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 MAXP61244 160 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 GPLD1P80108 840 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 DPYSQ14117 519 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 PLEKHA7Q6IQ23 1121 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 TRIM74Q86UV6 250 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 UNC5BQ8IZJ1 945 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 LZTR1Q8N653 840 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 SCRN2Q96FV2 425 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 SLC45A3Q96JT2 553 aa19.31■□□□□ 0.68
CLN3-262ENST00000637699 TMEM191CA6NGB0 347 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 PSMD11O00231 422 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 CAPN5O15484 640 aaPredicted RBP19.3■□□□□ 0.68
CLN3-262ENST00000637699 PGLSO95336 258 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 SOD1P00441 154 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 HSPA9P38646 679 aaKnown RBP19.3■□□□□ 0.68
CLN3-262ENST00000637699 CASRP41180 1078 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 HCAR3P49019 387 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 FOXK1P85037 733 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 DPTQ07507 201 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 USP45Q70EL2 814 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 TECPR1Q7Z6L1 1165 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 NLGN4XQ8N0W4 816 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 BMPERQ8N8U9 685 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 ANKRD20A12PQ8NF67 263 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 NLGN4YQ8NFZ3 816 aaPredicted RBP19.3■□□□□ 0.68
CLN3-262ENST00000637699 OR10G6Q8NH81 332 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 C9orf43Q8TAL5 461 aaPredicted RBP19.3■□□□□ 0.68
CLN3-262ENST00000637699 SLC37A2Q8TED4 501 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 SCAMP4Q969E2 229 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 KIAA1143Q96AT1 154 aaPredicted RBP19.3■□□□□ 0.68
CLN3-262ENST00000637699 AP2M1Q96CW1 435 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 RTP4Q96DX8 246 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 SCARF2Q96GP6 870 aaPredicted RBP19.3■□□□□ 0.68
CLN3-262ENST00000637699 ABCG8Q9H221 673 aa19.3■□□□□ 0.68
CLN3-262ENST00000637699 LIMA1Q9UHB6 759 aaKnown RBP19.3■□□□□ 0.68
CLN3-262ENST00000637699 LOC101059948A0A1B0GTJ6 334 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 MAP3K6O95382 1288 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 EML2O95834 649 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 CCDC172P0C7W6 258 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 AMPD1P23109 780 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 FASLGP48023 281 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 PYCR3Q53H96 274 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 ARMC12Q5T9G4 340 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 ADAMTSL4Q6UY14 1074 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 IRF2BP2Q7Z5L9 587 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 PSTKQ8IV42 348 aaKnown RBP19.29■□□□□ 0.68
CLN3-262ENST00000637699 BBS5Q8N3I7 341 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 TEFMQ96QE5 360 aaKnown RBP19.29■□□□□ 0.68
CLN3-262ENST00000637699 SMIM14Q96QK8 99 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 ERGIC2Q96RQ1 377 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 MCCC1Q96RQ3 725 aaPredicted RBP19.29■□□□□ 0.68
CLN3-262ENST00000637699 MGME1Q9BQP7 344 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 ZWILCHQ9H900 591 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 ETNK2Q9NVF9 386 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 PDP2Q9P2J9 529 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 ANAPC2Q9UJX6 822 aa19.29■□□□□ 0.68
CLN3-262ENST00000637699 H3BRJ5 948 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 MAFKO60675 156 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 LRCH4O75427 683 aa19.28■□□□□ 0.68
CLN3-262ENST00000637699 MAP4P27816 1152 aaKnown RBP19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms