RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CDK3Q00526 305 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 CYP4F3Q08477 520 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 SLC14A2Q15849 920 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 QPCTQ16769 361 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 TEX44Q53QW1 395 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 EFL1Q7Z2Z2 1120 aaKnown RBP19.19■□□□□ 0.66
CLN3-260ENST00000637578 ARL10Q8N8L6 244 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 HES6Q96HZ4 224 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 TRIB3Q96RU7 358 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 FRMD8Q9BZ67 464 aaPredicted RBP19.19■□□□□ 0.66
CLN3-260ENST00000637578 SLC25A51Q9H1U9 297 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 PADI4Q9UM07 663 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 PRSS38A1L453 326 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 CPED1A4D0V7 1026 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 DDX3YO15523 660 aaKnown RBP19.19■□□□□ 0.66
CLN3-260ENST00000637578 PECAM1P16284 738 aaPredicted RBP19.19■□□□□ 0.66
CLN3-260ENST00000637578 RWDD2BP57060 319 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 LLGL1Q15334 1064 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 OGFOD3Q6PK18 319 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 NRSN1Q8IZ57 195 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 UBL4BQ8N7F7 174 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 LPCAT1Q8NF37 534 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 NAT6Q93015 286 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 RBM41Q96IZ5 413 aaKnown RBP19.19■□□□□ 0.66
CLN3-260ENST00000637578 AGAP3Q96P47 875 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 CEP41Q9BYV8 373 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 SLC17A4Q9Y2C5 497 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 APC2O95996 2303 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 CLDN7O95471 211 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 PTPN3P26045 913 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 PPP2R5EQ16537 467 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 PERM1Q5SV97 790 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 FAM182AQ5T1J6 154 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 ADAMTSL4Q6UY14 1074 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 B4GALNT4Q76KP1 1039 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 CCDC50Q8IVM0 306 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 MAPK15Q8TD08 544 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 SCAMP4Q969E2 229 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 AP2M1Q96CW1 435 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 NXPE2Q96DL1 559 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 SCARF2Q96GP6 870 aaPredicted RBP19.18■□□□□ 0.66
CLN3-260ENST00000637578 TEKT5Q96M29 485 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 MLPHQ9BV36 600 aaPredicted RBP19.18■□□□□ 0.66
CLN3-260ENST00000637578 ADGRE3Q9BY15 652 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 TMEM168Q9H0V1 697 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 ABCG4Q9H172 646 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 CYP4F12Q9HCS2 524 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 GPR34Q9UPC5 381 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 DOLKQ9UPQ8 538 aa19.18■□□□□ 0.66
CLN3-260ENST00000637578 MYLKQ15746 1914 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 WASHC5Q12768 1159 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 MEI1Q5TIA1 1274 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 KAZNQ674X7 775 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 RAET1GQ6H3X3 334 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 C17orf53Q8N3J3 647 aaPredicted RBP19.17■□□□□ 0.66
CLN3-260ENST00000637578 KYQ8NBH2 561 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 GPR156Q8NFN8 814 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 GPBAR1Q8TDU6 330 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 TFB1MQ8WVM0 346 aaKnown RBP19.17■□□□□ 0.66
CLN3-260ENST00000637578 P3H4Q92791 437 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 WDR24Q96S15 920 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 GLOD4Q9HC38 313 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 SEPT10Q9P0V9 454 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 CD84Q9UIB8 345 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 EFR3BQ9Y2G0 817 aa19.17■□□□□ 0.66
CLN3-260ENST00000637578 CFAP47Q6ZTR5 3102 aa19.16■□□□□ 0.66
CLN3-260ENST00000637578 GOLGA6L9A6NEM1 432 aa19.16■□□□□ 0.66
CLN3-260ENST00000637578 PYGLP06737 847 aa19.16■□□□□ 0.66
CLN3-260ENST00000637578 PYGMP11217 842 aa19.16■□□□□ 0.66
CLN3-260ENST00000637578 GPR1P46091 355 aa19.16■□□□□ 0.66
CLN3-260ENST00000637578 COPS2P61201 443 aa19.16■□□□□ 0.66
CLN3-260ENST00000637578 BBS12Q6ZW61 710 aa19.16■□□□□ 0.66
CLN3-260ENST00000637578 DEPDC7Q96QD5 511 aa19.16■□□□□ 0.66
CLN3-260ENST00000637578 TRNAU1APQ9NX07 287 aaKnown RBP19.16■□□□□ 0.66
CLN3-260ENST00000637578 ACACAQ13085 2346 aa19.16■□□□□ 0.66
CLN3-260ENST00000637578 ANKRD11Q6UB99 2663 aaPredicted RBP19.15■□□□□ 0.66
CLN3-260ENST00000637578 C1orf232A0A0U1RR37 186 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 RGSL1A5PLK6 1076 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 MTSS1O43312 755 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 KIF5CO60282 957 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 IVLP07476 585 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 CD68P34810 354 aaPredicted RBP19.15■□□□□ 0.66
CLN3-260ENST00000637578 SPINT3P49223 89 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 RPS6KA1Q15418 735 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 TCEA2Q15560 299 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 ZNF569Q5MCW4 686 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 AADACL2Q6P093 401 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 TAF8Q7Z7C8 310 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 NRROSQ86YC3 692 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 CCL4L1Q8NHW4 92 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 PTCD2Q8WV60 388 aaKnown RBP19.15■□□□□ 0.66
CLN3-260ENST00000637578 UBE2Q2Q8WVN8 375 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 EID2BQ96D98 161 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 COX14Q96I36 57 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 AGAP2Q99490 1192 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 TLR10Q9BXR5 811 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 CARS2Q9HA77 564 aaKnown RBP19.15■□□□□ 0.66
CLN3-260ENST00000637578 KCND1Q9NSA2 647 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 GULP1Q9UBP9 304 aa19.15■□□□□ 0.66
CLN3-260ENST00000637578 PKD1L2Q7Z442 2459 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms