RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 NRSN1Q8IZ57 195 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 CACNA2D3Q8IZS8 1091 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 ATL2Q8NHH9 583 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 KIAA1524Q8TCG1 905 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 TUBGCP5Q96RT8 1024 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 AGAP2Q99490 1192 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 AGPAT1Q99943 283 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 CNPY3Q9BT09 278 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 RETREG1Q9H6L5 497 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 APMAPQ9HDC9 416 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 FANCLQ9NW38 375 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 TMEM51Q9NW97 253 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 GEMIN8Q9NWZ8 242 aaKnown RBP8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 KLHL3Q9UH77 587 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 MRPS18BQ9Y676 258 aaKnown RBP8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 ATRQ13535 2644 aa8.63□□□□□ -1.03
SHKBP1-220ENST00000599716 IGHV1OR21-1A0A087WYE8 117 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 LOC101059948A0A1B0GTJ6 334 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 ARHGAP42A6NI28 874 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 K7EM74 188 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 TNFRSF10CO14798 259 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 INPP4BO15327 924 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 FGF10O15520 208 aaPredicted RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 DAPK3O43293 454 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 RAD1O60671 282 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 HEXIM1O94992 359 aaKnown RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 THRAP10827 490 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 KELP23276 732 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 EEF1GP26641 437 aaKnown RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 ACTR1BP42025 376 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 NDST2P52849 883 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 COPB1P53618 953 aaKnown RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 LIMK2P53671 638 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 GSCP56915 257 aaPredicted RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 ACTR1AP61163 376 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 CDK3Q00526 305 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 ILF3Q12906 894 aaKnown RBP eCLIP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 KCNAB2Q13303 367 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 LBRQ14739 615 aaKnown RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 GRM3Q14832 879 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 SMTNL2Q2TAL5 461 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 TMEM164Q5U3C3 297 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 CDKAL1Q5VV42 579 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 BORAQ6PGQ7 559 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 RFX8Q6ZV50 586 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 TIPARPQ7Z3E1 657 aaKnown RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 ZNF438Q7Z4V0 828 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 MCOLN2Q8IZK6 566 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 ZNF564Q8TBZ8 553 aaPredicted RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 HCAR2Q8TDS4 363 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 LRRN4Q8WUT4 740 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 SCAMP4Q969E2 229 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 TAAR9Q96RI9 348 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 TEX101Q9BY14 249 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 FRMD8Q9BZ67 464 aaPredicted RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 NUP62CLQ9H1M0 184 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 NOD2Q9HC29 1040 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 PHPT1Q9NRX4 125 aaPredicted RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 SLC39A1Q9NY26 324 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 CWC15Q9P013 229 aaKnown RBP8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 PLAAQ9Y263 795 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 GTF3C3Q9Y5Q9 886 aa8.62□□□□□ -1.03
SHKBP1-220ENST00000599716 ANKRD62A6NC57 917 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 MAP3K6O95382 1288 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 PEX11BO96011 259 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 SOD1P00441 154 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 CPP00450 1065 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 PDHA1P08559 390 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 AMPD1P23109 780 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 OAS2P29728 719 aaKnown RBP8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 MIPP30301 263 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 VIPR1P32241 457 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 CSTF2P33240 577 aaKnown RBP eCLIP8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 MAPK9P45984 424 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 CSNK1DP48730 415 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 ATP1A2P50993 1020 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 IL10RBQ08334 325 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 NFATC2Q13469 925 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 MAMLD1Q13495 774 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 ZNF235Q14590 738 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 IHHQ14623 411 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 DEFB109BQ30KR1 87 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 FKBP15Q5T1M5 1219 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 TXNRD3NBQ6F5E7 133 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 ACAD10Q6JQN1 1059 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 C16orf46Q6P387 395 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 NEK11Q8NG66 645 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 SLC37A2Q8TED4 501 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 TMEM159Q96B96 161 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 DTD2Q96FN9 168 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 POM121Q96HA1 1249 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 GSDMCQ9BYG8 508 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 ARFGAP3Q9NP61 516 aa8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 AKAP7Q9P0M2 348 aaPredicted RBP8.61□□□□□ -1.03
SHKBP1-220ENST00000599716 CFAP69A5D8W1 941 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 HGSO14964 777 aaPredicted RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 HTRA2O43464 458 aaPredicted RBP8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 SNX2O60749 519 aa8.6□□□□□ -1.03
SHKBP1-220ENST00000599716 ATP1A1P05023 1023 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms