RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 MOSPD1Q9UJG1 213 aa15.24■□□□□ 0.03
UPF1-204ENST00000596842 A0A1W2PQH9 124 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 ARL5CA6NH57 179 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 GABRDO14764 452 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 AZIN1O14977 448 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 PIM1P11309 404 aaPredicted RBP15.23■□□□□ 0.03
UPF1-204ENST00000596842 PSMD5Q16401 504 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 UNC50Q53HI1 259 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CARM1Q86X55 608 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CAMK1DQ8IU85 385 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 SLC15A3Q8IY34 581 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CMTR2Q8IYT2 770 aaKnown RBP15.23■□□□□ 0.03
UPF1-204ENST00000596842 CLYBLQ8N0X4 340 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 PARP8Q8N3A8 854 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CDK15Q96Q40 435 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 MTG1Q9BT17 334 aaPredicted RBP15.23■□□□□ 0.03
UPF1-204ENST00000596842 SPON2Q9BUD6 331 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 MUC3BQ9H195 1237 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CXorf21Q9HAI6 301 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 WARS2Q9UGM6 360 aaKnown RBP15.23■□□□□ 0.03
UPF1-204ENST00000596842 FADS3Q9Y5Q0 445 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 C17orf102A2RUQ5 167 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 RHOBTB1O94844 696 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CDK14O94921 469 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 C8BP07358 591 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 EEF1DP29692 281 aaKnown RBP15.23■□□□□ 0.03
UPF1-204ENST00000596842 KPNA1P52294 538 aaPredicted RBP15.23■□□□□ 0.03
UPF1-204ENST00000596842 INTS6LQ5JSJ4 861 aaKnown RBP15.23■□□□□ 0.03
UPF1-204ENST00000596842 ZNF678Q5SXM1 525 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 RANBP10Q6VN20 620 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 ISCA2Q86U28 154 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 SLC22A9Q8IVM8 553 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 RMDN1Q96DB5 314 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 KCTD14Q9BQ13 255 aaPredicted RBP15.23■□□□□ 0.03
UPF1-204ENST00000596842 MCMBPQ9BTE3 642 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 DUS2Q9NX74 493 aaKnown RBP15.23■□□□□ 0.03
UPF1-204ENST00000596842 PLK2Q9NYY3 685 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 RNF112Q9ULX5 631 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 A0A087WXM4 84 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 IRAK2O43187 625 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 SOAT2O75908 522 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 ITGB1P05556 798 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 GPR15P49685 360 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CLCN5P51795 746 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 AIF1P55008 147 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 IL1RL1Q01638 556 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 MERTKQ12866 999 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 BNIP3Q12983 259 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 ADRM1Q16186 407 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CCL14Q16627 93 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CILP2Q8IUL8 1156 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 ISOC1Q96CN7 298 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 NMUR1Q9HB89 426 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 TIMMDC1Q9NPL8 285 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 MAP10Q9P2G4 905 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 CDH9Q9ULB4 789 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 RAD54BQ9Y620 910 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 HS3ST4Q9Y661 456 aa15.23■□□□□ 0.03
UPF1-204ENST00000596842 J3QRK9 145 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 ARPC2O15144 300 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 SLC2A3P11169 496 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 IMPDH1P20839 514 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 PRDX3P30048 256 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 CDK9P50750 372 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 TRAF2Q12933 501 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 ACAP2Q15057 778 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 ALFQ53S48 1182 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 PM20D1Q6GTS8 502 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 OVOS1Q6IE37 1185 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 CLEC4FQ8N1N0 589 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 FBXL8Q96CD0 374 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 PPP1R10Q96QC0 940 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 RANBP9Q96S59 729 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 SEMA3CQ99985 751 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 SLC2A11Q9BYW1 496 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 AP5M1Q9H0R1 490 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 TREX1Q9NSU2 369 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 KCNH4Q9UQ05 1017 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 ZNF510Q9Y2H8 683 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 MAGED1Q9Y5V3 778 aaPredicted RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 TMEM247A6NEH6 219 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 SNAP29O95721 258 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 GLP2RO95838 553 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 HSPA1AP0DMV8 641 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 HSPA1BP0DMV9 641 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 NAT1P18440 290 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 KCNK10P57789 538 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 RAP1GAP2Q684P5 730 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 RNF19BQ6ZMZ0 732 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 ERMP1Q7Z2K6 904 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 ERI1Q8IV48 349 aaKnown RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 OR10T2Q8NGX3 314 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 PPP1R14BQ96C90 147 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 PPM1MQ96MI6 270 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 RPRD1AQ96P16 312 aaPredicted RBP15.22■□□□□ 0.03
UPF1-204ENST00000596842 TBC1D13Q9NVG8 400 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 TMEM181Q9P2C4 612 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 RABL2BQ9UNT1 228 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 SLC8A2Q9UPR5 921 aa15.22■□□□□ 0.03
UPF1-204ENST00000596842 PRRC2BQ5JSZ5 2229 aaKnown RBP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms