RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 KIAA0408Q6ZU52 694 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 MARK2Q7KZI7 788 aaKnown RBP10.71□□□□□ -0.69
SS18-213ENST00000579640 HSD11B1LQ7Z5J1 315 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 TECPR1Q7Z6L1 1165 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 NLRP8Q86W28 1048 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 SLC26A11Q86WA9 606 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 LRRC6Q86X45 466 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 GPR150Q8NGU9 434 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 UHMK1Q8TAS1 419 aaKnown RBP10.71□□□□□ -0.69
SS18-213ENST00000579640 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.71□□□□□ -0.69
SS18-213ENST00000579640 DTD2Q96FN9 168 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 RUFY1Q96T51 708 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 WRAP53Q9BUR4 548 aaKnown RBP10.71□□□□□ -0.69
SS18-213ENST00000579640 TMEM109Q9BVC6 243 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 BTBD1Q9H0C5 482 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 FAM83DQ9H4H8 585 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 CATSPERZQ9NTU4 200 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 C2orf42Q9NWW7 574 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 VPS18Q9P253 973 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 SLC24A2Q9UI40 661 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 GGT7Q9UJ14 662 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 SLC30A1Q9Y6M5 507 aa10.71□□□□□ -0.69
SS18-213ENST00000579640 LRRC72A6NJI9 287 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 MAP2K7O14733 419 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 PFDN6O15212 129 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 MMP20O60882 483 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 TM7SF2O76062 418 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 PDGFBP01127 241 aaPredicted RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 SHBGP04278 402 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 ERVK-10P10266 1014 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 ITGALP20701 1170 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 OGNP20774 298 aaKnown RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 RPS21P63220 83 aaKnown RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 CACNG1Q06432 222 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 PEX6Q13608 980 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 ITGA9Q13797 1035 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 AGERQ15109 404 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 ZNF284Q2VY69 593 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 MAP7D1Q3KQU3 841 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 GPR33Q49SQ1 333 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 FASTKD1Q53R41 847 aaKnown RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 AARS2Q5JTZ9 985 aaKnown RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 TEDDM1Q5T9Z0 273 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 SNX20Q7Z614 316 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 SDCCAG8Q86SQ7 713 aaPredicted RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 CTAGE3PQ8IX95 158 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 UNC5BQ8IZJ1 945 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 GPR26Q8NDV2 337 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 OR2T34Q8NGX1 318 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 ZIM3Q96PE6 472 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 IL26Q9NPH9 171 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 IARS2Q9NSE4 1012 aaKnown RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 NFS1Q9Y697 457 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 IKBKGQ9Y6K9 419 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 TECTAO75443 2155 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 CCL22O00626 93 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 CD3EAPO15446 510 aaKnown RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 RNGTTO60942 597 aaKnown RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 SRP72O76094 671 aaKnown RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 RECQL5O94762 991 aaPredicted RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 PRAMEF1O95521 474 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 PYGLP06737 847 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 HOXA6P31267 233 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 FOXN2P32314 431 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 PPARGP37231 505 aaPredicted RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 ETV3P41162 512 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 MSH2P43246 934 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 DPTQ07507 201 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 RASA2Q15283 850 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 LYPLAL1Q5VWZ2 237 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 FAM151BQ6UXP7 276 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 CERS6Q6ZMG9 384 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 Q6ZVL8 140 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 PTAR1Q7Z6K3 402 aaPredicted RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 GALNT7Q86SF2 657 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 TRIM69Q86WT6 500 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 HORMAD1Q86X24 394 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 TDRPQ86YL5 185 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 RIBC1Q8N443 379 aaPredicted RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 TRAM1L1Q8N609 369 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 OTUD6BQ8N6M0 293 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 PPM1NQ8N819 430 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 SLC44A1Q8WWI5 657 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 ASB12Q8WXK4 309 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 ULK4Q96C45 1275 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 NUS1Q96E22 293 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 TCF12Q99081 682 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 TTC1Q99614 292 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 CPNE1Q99829 537 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 ZSCAN5AQ9BUG6 496 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 C1QTNF7Q9BXJ2 289 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 SUDS3Q9H7L9 328 aaPredicted RBP10.7□□□□□ -0.7
SS18-213ENST00000579640 SMYD2Q9NRG4 433 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 TXNDC16Q9P2K2 825 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 VPS9D1Q9Y2B5 631 aa10.7□□□□□ -0.7
SS18-213ENST00000579640 TBC1D3DA0A087WVF3 549 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 TBC1D3IA0A087WXS9 549 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 TBC1D3EA0A087X179 549 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 TBC1D3KA0A087X1G2 549 aa10.69□□□□□ -0.7
SS18-213ENST00000579640 CCDC163A0A0D9SF12 145 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms