RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 TRAF6Q9Y4K3 522 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 CHD9Q3L8U1 2897 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 ANAPC1Q9H1A4 1944 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 TEX28O15482 410 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 F11P03951 625 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 THRAP10827 490 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 GFAPP14136 432 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 MC4RP32245 332 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 MNX1P50219 401 aaPredicted RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 DNAJB13P59910 316 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 ACVR1Q04771 509 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 TSNQ15631 228 aaKnown RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 SLC14A2Q15849 920 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 SETMARQ53H47 684 aaPredicted RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 UNC50Q53HI1 259 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 ZNF678Q5SXM1 525 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 PGM2L1Q6PCE3 622 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 LAYNQ6UX15 382 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 OTOP2Q7RTS6 562 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 HS6ST3Q8IZP7 471 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 FBXW8Q8N3Y1 598 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 SIDT2Q8NBJ9 832 aaKnown RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 ADAMTS19Q8TE59 1207 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 TOP1MTQ969P6 601 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 RPL10LQ96L21 214 aaKnown RBP10.6□□□□□ -0.71
CUX1-217ENST00000558836 ZNF558Q96NG5 402 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 ZNF599Q96NL3 588 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 FEM1AQ9BSK4 669 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 RTKNQ9BST9 563 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 ZBTB26Q9HCK0 441 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 VTI1BQ9UEU0 232 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 OGDHLQ9ULD0 1010 aa10.6□□□□□ -0.71
CUX1-217ENST00000558836 C2orf81A6NN90 581 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 F8W8V4 182 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 WISP3O95389 354 aaPredicted RBP10.59□□□□□ -0.71
CUX1-217ENST00000558836 MTHFD2P13995 350 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 IMPDH1P20839 514 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 AP2B1P63010 937 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 DSG1Q02413 1049 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 CDH18Q13634 790 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 LPCAT4Q643R3 524 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 CYHR1Q6ZMK1 362 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 TAS2R42Q7RTR8 314 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 SLC39A11Q8N1S5 342 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 KYQ8NBH2 561 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 CEP70Q8NHQ1 597 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 TRPC4APQ8TEL6 797 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 DDI1Q8WTU0 396 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 UCMAQ8WVF2 138 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 EID2BQ96D98 161 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 AARSD1Q9BTE6 412 aaKnown RBP10.59□□□□□ -0.71
CUX1-217ENST00000558836 SEMA4BQ9NPR2 832 aaPredicted RBP10.59□□□□□ -0.71
CUX1-217ENST00000558836 NLE1Q9NVX2 485 aaPredicted RBP10.59□□□□□ -0.71
CUX1-217ENST00000558836 TBC1D30Q9Y2I9 924 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 SUPT3HB4E1H0 165 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 SUPT3HO75486 399 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 URODP06132 367 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 CKMP06732 381 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 ITGB6P18564 788 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 GABRR2P28476 465 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 THOP1P52888 689 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 RHOAP61586 193 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 ALG1LQ6GMV1 187 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 KLHDC10Q6PID8 442 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 ANKRD33Q7Z3H0 272 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 HMGCLL1Q8TB92 370 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 MYRFLQ96LU7 910 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 CCDC68Q9H2F9 335 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 MID1IP1Q9NPA3 183 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 NDE1Q9NXR1 346 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 VPS51Q9UID3 782 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 INSL5Q9Y5Q6 135 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 SLCO1B7G3V0H7 640 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 STX7O15400 261 aaKnown RBP10.59□□□□□ -0.71
CUX1-217ENST00000558836 CCNT2O60583 730 aaKnown RBP10.59□□□□□ -0.71
CUX1-217ENST00000558836 CHRM3P20309 590 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 CA5AP35218 305 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 AGTR2P50052 363 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 ART3Q13508 389 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 ARHGEF6Q15052 776 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 SCIMPQ6UWF3 145 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 SETD3Q86TU7 594 aaPredicted RBP10.59□□□□□ -0.71
CUX1-217ENST00000558836 RP9Q8TA86 221 aaKnown RBP10.59□□□□□ -0.71
CUX1-217ENST00000558836 LPGAT1Q92604 370 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 TNKS2Q9H2K2 1166 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 ZNF385DQ9H6B1 395 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 EML4Q9HC35 981 aaKnown RBP10.59□□□□□ -0.71
CUX1-217ENST00000558836 S100A14Q9HCY8 104 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 ADAMTS6Q9UKP5 1117 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 BTRCQ9Y297 605 aa10.59□□□□□ -0.71
CUX1-217ENST00000558836 PRUNE2Q8WUY3 3088 aa10.58□□□□□ -0.72
CUX1-217ENST00000558836 NPEPPSL1A6NEC2 478 aa10.58□□□□□ -0.72
CUX1-217ENST00000558836 TRPC5OSA6NMA1 111 aa10.58□□□□□ -0.72
CUX1-217ENST00000558836 GPC4O75487 556 aa10.58□□□□□ -0.72
CUX1-217ENST00000558836 XRCC1P18887 633 aaPredicted RBP10.58□□□□□ -0.72
CUX1-217ENST00000558836 ATP6V1C1P21283 382 aa10.58□□□□□ -0.72
CUX1-217ENST00000558836 LPOP22079 712 aaPredicted RBP10.58□□□□□ -0.72
CUX1-217ENST00000558836 DNAJB1P25685 340 aa10.58□□□□□ -0.72
CUX1-217ENST00000558836 PRDX3P30048 256 aaKnown RBP10.58□□□□□ -0.72
CUX1-217ENST00000558836 EPHB3P54753 998 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms