RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ABCG4Q9H172 646 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 GOLPH3Q9H4A6 298 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 GLOD4Q9HC38 313 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 MAGEE1Q9HCI5 957 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 CYP4F12Q9HCS2 524 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 MRPL40Q9NQ50 206 aaKnown RBP15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 APPL1Q9UKG1 709 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 PCDHA3Q9Y5H8 950 aa15.99■□□□□ 0.15
CCDC88C-209ENST00000554872 CCDC66A2RUB6 948 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 CPED1A4D0V7 1026 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 APOC4-APOC2K7ER74 178 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 APOC2P02655 101 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 PECAM1P16284 738 aaPredicted RBP15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 CTNNA2P26232 953 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 GPR1P46091 355 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 MARCKSL1P49006 195 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 SPINT3P49223 89 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 VAV2P52735 878 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 DYNLT1P63172 113 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 WASHC5Q12768 1159 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 XRCC4Q13426 336 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 ISXQ2M1V0 245 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 PERM1Q5SV97 790 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 CERCAMQ5T4B2 595 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 HENMT1Q5T8I9 393 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 DENND2CQ68D51 928 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 RD3Q7Z3Z2 195 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 TXLNBQ8N3L3 684 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 LRRC57Q8N9N7 239 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 KIAA1524Q8TCG1 905 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 KRT35Q92764 455 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 P3H4Q92791 437 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 AGAP3Q96P47 875 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 QKIQ96PU8 341 aaKnown RBP eCLIP15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 TMEM168Q9H0V1 697 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 VPS18Q9P253 973 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 GPSM3Q9Y4H4 160 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 FAM208BQ5VWN6 2430 aa15.98■□□□□ 0.15
CCDC88C-209ENST00000554872 C1orf232A0A0U1RR37 186 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 NOBOXO60393 691 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 CSO75390 466 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 ZNF189O75820 626 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 CLDN7O95471 211 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 EPOP01588 193 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 FUCA1P04066 466 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 TNNT1P13805 278 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 GLB1P16278 677 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 MLLT3P42568 568 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 CDK18Q07002 472 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 ADCY2Q08462 1091 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 ILF3Q12906 894 aaKnown RBP eCLIP15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 HLTFQ14527 1009 aaKnown RBP eCLIP15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 PDPK2PQ6A1A2 396 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 RBM44Q6ZP01 1051 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 TAF8Q7Z7C8 310 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 LSMEM2Q8N112 164 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 CCHCR1Q8TD31 782 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 SCAMP4Q969E2 229 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 HIC2Q96JB3 615 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 SMIM14Q96QK8 99 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 WDR24Q96S15 920 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 BAG1Q99933 345 aaPredicted RBP15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 CCDC3Q9BQI4 270 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 GSDMCQ9BYG8 508 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 CARS2Q9HA77 564 aaKnown RBP15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 RAD18Q9NS91 495 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 PKD2L2Q9NZM6 624 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 SUFUQ9UMX1 484 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 TFR2Q9UP52 801 aa15.97■□□□□ 0.15
CCDC88C-209ENST00000554872 RP1P56715 2156 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 NUDT21O43809 227 aaKnown RBP15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 NDST3O95803 873 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 LSSP48449 732 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 LRP8Q14114 963 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 NR1D2Q14995 579 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 NOMO1Q15155 1222 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 C14orf28Q4W4Y0 310 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 RFLNAQ6ZTI6 216 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 ZNF438Q7Z4V0 828 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 NRROSQ86YC3 692 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 FAM46DQ8NEK8 389 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 RIOK2Q9BVS4 552 aaKnown RBP15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 CEP41Q9BYV8 373 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 LACRTQ9GZZ8 138 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 RMI1Q9H9A7 625 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 ZFYVE1Q9HBF4 777 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 SAE1Q9UBE0 346 aaPredicted RBP15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 TRHDEQ9UKU6 1024 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 RAXQ9Y2V3 346 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 PCDHB1Q9Y5F3 818 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 PCDHGA8Q9Y5G5 932 aa15.96■□□□□ 0.15
CCDC88C-209ENST00000554872 A0A0U1RQS6 177 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 LOC285095A0A1B0GVY8 99 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 GPR89AB7ZAQ6 455 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 GPR89BP0CG08 455 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 CD68P34810 354 aaPredicted RBP15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 CLPPQ16740 277 aaPredicted RBP15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 TBC1D25Q3MII6 688 aa15.95■□□□□ 0.14
CCDC88C-209ENST00000554872 KAZNQ674X7 775 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms