RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 AP2M1Q96CW1 435 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 EID2BQ96D98 161 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 RBM41Q96IZ5 413 aaKnown RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 WDR24Q96S15 920 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 DESI2Q9BSY9 194 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 MLPHQ9BV36 600 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 HEMGNQ9BXL5 484 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 PHPT1Q9NRX4 125 aaPredicted RBP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 NCKIPSDQ9NZQ3 722 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 DKK4Q9UBT3 224 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 TRIM10Q9UDY6 481 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 CD84Q9UIB8 345 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 DNPEPQ9ULA0 475 aa10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.25□□□□□ -0.77
CCDC88C-206ENST00000553437 PRSS38A1L453 326 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 CCDC66A2RUB6 948 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 CPED1A4D0V7 1026 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 MT-CYBP00156 380 aaPredicted RBP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 MT-CO3P00414 261 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 PTPN7P35236 360 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 POLD2P49005 469 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 NAP1L1P55209 391 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 CDK18Q07002 472 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 GALNT3Q14435 633 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 PERM1Q5SV97 790 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 RAET1GQ6H3X3 334 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 OGFOD3Q6PK18 319 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 ADAMTSL4Q6UY14 1074 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 EFL1Q7Z2Z2 1120 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 KIAA1328Q86T90 577 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 ZC3H18Q86VM9 953 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 PROSER1Q86XN7 944 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 GKN2Q86XP6 184 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 NRROSQ86YC3 692 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 CCDC50Q8IVM0 306 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 PDCD7Q8N8D1 485 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 CCL4L1Q8NHW4 92 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 MDM1Q8TC05 714 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 HAUS1Q96CS2 278 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 SCARF2Q96GP6 870 aaPredicted RBP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 QKIQ96PU8 341 aaKnown RBP eCLIP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 RIOK2Q9BVS4 552 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 ADGRE3Q9BY15 652 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 TMEM168Q9H0V1 697 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 CCDC86Q9H6F5 360 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 CYP4F12Q9HCS2 524 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 CNOT6Q9ULM6 557 aaKnown RBP10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 PADI4Q9UM07 663 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 CLCA2Q9UQC9 943 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 SLC17A4Q9Y2C5 497 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 EFR3BQ9Y2G0 817 aa10.24□□□□□ -0.77
CCDC88C-206ENST00000553437 C1orf232A0A0U1RR37 186 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 RGSL1A5PLK6 1076 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 SRRM3A6NNA2 597 aaPredicted RBP10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 HACD1B0YJ81 288 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 APOC4-APOC2K7ER74 178 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 CASC3O15234 703 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 MTSS1O43312 755 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 APOC2P02655 101 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 IVLP07476 585 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 PYGMP11217 842 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 GPR1P46091 355 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 SPINT3P49223 89 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 RPIAP49247 311 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 RWDD2BP57060 319 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 CYP4F3Q08477 520 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 XRCC4Q13426 336 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 NOMO1Q15155 1222 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 AADACL2Q6P093 401 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 KDELC1Q6UW63 502 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 LYSMD3Q7Z3D4 306 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 KDELC2Q7Z4H8 507 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 TMC3Q7Z5M5 1100 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 SFTPA2Q8IWL1 248 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 ZNF567Q8N184 647 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 ARL10Q8N8L6 244 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 KYQ8NBH2 561 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 GPR156Q8NFN8 814 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 ACTL9Q8TC94 416 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 MAPK15Q8TD08 544 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 GPBAR1Q8TDU6 330 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 HTR3CQ8WXA8 447 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 SCG3Q8WXD2 468 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 GLMNQ92990 594 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 COX14Q96I36 57 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 OSBPL8Q9BZF1 889 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 C10orf88Q9H8K7 445 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 CARS2Q9HA77 564 aaKnown RBP10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 MAGEE1Q9HCI5 957 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 EVA1BQ9NVM1 165 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 FAM153AQ9UHL3 310 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 SUFUQ9UMX1 484 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 GPR34Q9UPC5 381 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 DOLKQ9UPQ8 538 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 TMEM98Q9Y2Y6 226 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 ST14Q9Y5Y6 855 aa10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 TP53BP1Q12888 1972 aaPredicted RBP10.23□□□□□ -0.77
CCDC88C-206ENST00000553437 HELZ2Q9BYK8 2649 aaKnown RBP10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 LOC285095A0A1B0GVY8 99 aa10.22□□□□□ -0.77
CCDC88C-206ENST00000553437 MACROD2A1Z1Q3 448 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms