RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CMASQ8NFW8 434 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 ATP6V0A1Q93050 837 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 CAVIN3Q969G5 261 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 MSI2Q96DH6 328 aaKnown RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 COQ10AQ96MF6 247 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 ZNF570Q96NI8 536 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 PLEKHG4BQ96PX9 1271 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 PCGF1Q9BSM1 259 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 SLCO5A1Q9H2Y9 848 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 DNAJC18Q9H819 358 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 ANKZF1Q9H8Y5 726 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 IL1RAPL2Q9NP60 686 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 MID1IP1Q9NPA3 183 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 SIRT3Q9NTG7 399 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 ABCB8Q9NUT2 735 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 MTMR10Q9NXD2 777 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 PLEKHB1Q9UF11 243 aaPredicted RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 RAP2CQ9Y3L5 183 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 TESMINQ9Y4I5 508 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 WNT6Q9Y6F9 365 aa5.84□□□□□ -1.47
SCFD1-208ENST00000553278 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.84□□□□□ -1.47
SCFD1-208ENST00000553278 TRBV5-7A0A0A0MS05 114 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 ENO4A6NNW6 628 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 PLSCR1O15162 318 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 ZWINTO95229 277 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 PNPP00491 289 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 UNGP13051 313 aaPredicted RBP5.83□□□□□ -1.48
SCFD1-208ENST00000553278 PFKFB1P16118 471 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 PDGFRAP16234 1089 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 PCGF2P35227 344 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 SIRPAP78324 504 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 RCN2Q14257 317 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 PNLIPRP3Q17RR3 467 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 PARP10Q53GL7 1025 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 SFMBT2Q5VUG0 894 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 RAB12Q6IQ22 244 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 GRASPQ7Z6J2 395 aaPredicted RBP5.83□□□□□ -1.48
SCFD1-208ENST00000553278 LDB1Q86U70 411 aaPredicted RBP5.83□□□□□ -1.48
SCFD1-208ENST00000553278 HOOK3Q86VS8 718 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 SYCP3Q8IZU3 236 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 TEX9Q8N6V9 391 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 ATAD1Q8NBU5 361 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 CORO2AQ92828 525 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 ZNF419Q96HQ0 510 aaPredicted RBP5.83□□□□□ -1.48
SCFD1-208ENST00000553278 CLMNQ96JQ2 1002 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 ZNF558Q96NG5 402 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 ACOX2Q99424 681 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 SEZ6LQ9BYH1 1024 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 KCNK15Q9H427 330 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 ZCCHC4Q9H5U6 513 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 NOL11Q9H8H0 719 aaKnown RBP5.83□□□□□ -1.48
SCFD1-208ENST00000553278 CNOT10Q9H9A5 744 aaKnown RBP5.83□□□□□ -1.48
SCFD1-208ENST00000553278 NRIP3Q9NQ35 241 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 ANKRD10Q9NXR5 420 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 TSPYL4Q9UJ04 414 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 CLIC4Q9Y696 253 aa5.83□□□□□ -1.48
SCFD1-208ENST00000553278 KAT6AQ92794 2004 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 SLC22A23A1A5C7 686 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 SMAD9O15198 467 aaKnown RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 KINO60870 393 aaKnown RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 B3GALNT1O75752 331 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 CELF2O95319 508 aaKnown RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 MMP3P08254 477 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 HOXC9P31274 260 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 MPLP40238 635 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 CXCR3P49682 368 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 CDH13P55290 713 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 C17orf67Q0P5P2 114 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 SREBF2Q12772 1141 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 CAPSQ13938 189 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 R3HDM1Q15032 1099 aaKnown RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 PGM5Q15124 567 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ZNF124Q15973 351 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 SOWAHAQ2M3V2 549 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ANKRD20A4Q4UJ75 823 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ANKRD20A8PQ5CZ79 823 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 DNAJC21Q5F1R6 531 aaKnown RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ANKRD20A2Q5SQ80 823 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 TTC39AQ5SRH9 613 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ANKRD20A1Q5TYW2 823 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 MEX3CQ5U5Q3 659 aaKnown RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ANKRD20A3Q5VUR7 823 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 PLA2G4FQ68DD2 849 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 HIST2H2BCQ6DN03 193 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 HIST2H2BDQ6DRA6 164 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 PLEKHA7Q6IQ23 1121 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 MOXD1Q6UVY6 613 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 PQLC2Q6ZP29 291 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 DPPA4Q7L190 304 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 CATSPER4Q7RTX7 472 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 MRGPREQ86SM8 312 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 HSCBQ8IWL3 235 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ADGRF4Q8IZF3 695 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ZNF619Q8N2I2 560 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 LINC00476Q8WZB0 136 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 SPACA9Q96E40 222 aaPredicted RBP5.82□□□□□ -1.48
SCFD1-208ENST00000553278 ZNF333Q96JL9 665 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 PPP1R13BQ96KQ4 1090 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 EGLN2Q96KS0 407 aa5.82□□□□□ -1.48
SCFD1-208ENST00000553278 AK8Q96MA6 479 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms