RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 NEMP2A6NFY4 417 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 SLCO1B7G3V0H7 640 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 EFCAB14O75071 495 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 FAM58BPP0C7Q3 252 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 HDCP19113 662 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 SLC5A2P31639 672 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 CD86P42081 329 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 WNT3AP56704 352 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 TNK2Q07912 1038 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 IL10RBQ08334 325 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 MTA1Q13330 715 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 PTK2BQ14289 1009 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 TAF12Q16514 161 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 SH2D4BQ5SQS7 431 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 NECAB2Q7Z6G3 386 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 TCEAL8Q8IYN2 117 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 CCNYL1Q8N7R7 359 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 PLD4Q96BZ4 506 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 ZNF334Q9HCZ1 680 aaPredicted RBP17.16■□□□□ 0.34
SPIDR-227ENST00000541342 MRPL17Q9NRX2 175 aaKnown RBP17.16■□□□□ 0.34
SPIDR-227ENST00000541342 DDX18Q9NVP1 670 aaKnown RBP17.16■□□□□ 0.34
SPIDR-227ENST00000541342 E7ENX8 843 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 PYGLP06737 847 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 IRF1P10914 325 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 ETFBP38117 255 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 SLC11A2P49281 568 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 ITKQ08881 620 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 NRF1Q16656 503 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 PCID2Q5JVF3 399 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 PKN3Q6P5Z2 889 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 PCDH20Q8N6Y1 951 aaKnown RBP17.16■□□□□ 0.34
SPIDR-227ENST00000541342 SLCO4A1Q96BD0 722 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 ASB9Q96DX5 294 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 PPP1R2P1Q96PQ5 205 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 KLF16Q9BXK1 252 aaPredicted RBP17.16■□□□□ 0.34
SPIDR-227ENST00000541342 PDFQ9HBH1 243 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 ACTL7AQ9Y615 435 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 FBP2O00757 339 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 PSMD8P48556 350 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 YBEYP58557 167 aaPredicted RBP17.16■□□□□ 0.34
SPIDR-227ENST00000541342 RAB10P61026 200 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 SLC22A12Q96S37 553 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 SEMA6AQ9H2E6 1030 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 ATP13A1Q9HD20 1204 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 SLC2A6Q9UGQ3 507 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 DMTF1Q9Y222 760 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 ACOT9Q9Y305 439 aa17.16■□□□□ 0.34
SPIDR-227ENST00000541342 CHD7Q9P2D1 2997 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 MUSKO15146 869 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 PRAMEF11O60813 436 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 BAIAP3O94812 1187 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 C8BP07358 591 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 HNRNPLP14866 589 aaKnown RBP eCLIP17.15■□□□□ 0.341e-8■■■■■ 28.9
SPIDR-227ENST00000541342 CLCN2P51788 898 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 SH3BGRP55822 239 aaPredicted RBP17.15■□□□□ 0.34
SPIDR-227ENST00000541342 SULT2A1Q06520 285 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 VEPH1Q14D04 833 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 LRRC23Q53EV4 343 aaPredicted RBP17.15■□□□□ 0.34
SPIDR-227ENST00000541342 CHSY3Q70JA7 882 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 LCA5Q86VQ0 697 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 ARRDC2Q8TBH0 407 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 SGF29Q96ES7 293 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 CYP2S1Q96SQ9 504 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 AGO1Q9UL18 857 aaKnown RBP17.15■□□□□ 0.34
SPIDR-227ENST00000541342 TMCO1Q9UM00 188 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 TRIM38O00635 465 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 FGF18O76093 207 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 HSPA8P11142 646 aaKnown RBP17.15■□□□□ 0.34
SPIDR-227ENST00000541342 COL6A2P12110 1019 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 KCNA5P22460 613 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 ESRP1Q6NXG1 681 aaKnown RBP17.15■□□□□ 0.34
SPIDR-227ENST00000541342 RPS27LQ71UM5 84 aaKnown RBP17.15■□□□□ 0.34
SPIDR-227ENST00000541342 GRIN3AQ8TCU5 1115 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 TADA1Q96BN2 335 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 MRPL1Q9BYD6 325 aaKnown RBP17.15■□□□□ 0.34
SPIDR-227ENST00000541342 IL23AQ9NPF7 189 aa17.15■□□□□ 0.34
SPIDR-227ENST00000541342 CNOT11Q9UKZ1 510 aaKnown RBP17.15■□□□□ 0.34
SPIDR-227ENST00000541342 FAM95CA0A1B0GW59 222 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 AURKAO14965 403 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 TRIM24O15164 1050 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 CSPG5O95196 566 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 HOXD9P28356 352 aaPredicted RBP17.14■□□□□ 0.34
SPIDR-227ENST00000541342 C1QTNF8P60827 252 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 PSME3P61289 254 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 LRP8Q14114 963 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 PPP1R3AQ16821 1122 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 OR7D4Q8NG98 312 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 ZBP1Q9H171 429 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 TCAF1Q9Y4C2 921 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 CEPT1Q9Y6K0 416 aa17.14■□□□□ 0.34
SPIDR-227ENST00000541342 H3BSA7 217 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 SLC1A2P43004 574 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 HSPA13P48723 471 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 RALGDSQ12967 914 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 TRIM25Q14258 630 aaKnown RBP17.14■□□□□ 0.33
SPIDR-227ENST00000541342 CCDC117Q8IWD4 279 aaPredicted RBP17.14■□□□□ 0.33
SPIDR-227ENST00000541342 SNX31Q8N9S9 440 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 HEXDCQ8WVB3 486 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 LRTOMTQ8WZ04 291 aa17.14■□□□□ 0.33
SPIDR-227ENST00000541342 ZNF597Q96LX8 424 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms