RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 SUDS3Q9H7L9 328 aaPredicted RBP13.09□□□□□ -0.31
RTN3-207ENST00000536011 ZNHIT6Q9NWK9 470 aaKnown RBP13.09□□□□□ -0.31
RTN3-207ENST00000536011 TAAR2Q9P1P5 351 aa13.09□□□□□ -0.31
RTN3-207ENST00000536011 ACSL6Q9UKU0 697 aa13.09□□□□□ -0.31
RTN3-207ENST00000536011 ATXN7L1Q9ULK2 861 aaPredicted RBP13.09□□□□□ -0.31
RTN3-207ENST00000536011 SUFUQ9UMX1 484 aa13.09□□□□□ -0.31
RTN3-207ENST00000536011 RPL26L1Q9UNX3 145 aaKnown RBP13.09□□□□□ -0.31
RTN3-207ENST00000536011 SLC17A4Q9Y2C5 497 aa13.09□□□□□ -0.31
RTN3-207ENST00000536011 LOXL2Q9Y4K0 774 aa13.09□□□□□ -0.31
RTN3-207ENST00000536011 CFAP46Q8IYW2 2715 aa13.09□□□□□ -0.31
RTN3-207ENST00000536011 A0A0J9YYE9 177 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 K7ENP7 123 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 NVLO15381 856 aaKnown RBP13.08□□□□□ -0.32
RTN3-207ENST00000536011 CBFA2T2O43439 604 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 FZD6O60353 706 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 TRBC1P01850 177 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 CD48P09326 243 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 SLC5A2P31639 672 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 HNRNPH3P31942 346 aaKnown RBP13.08□□□□□ -0.32
RTN3-207ENST00000536011 CASP14P31944 242 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 GPR3P46089 330 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 ZFP36L1Q07352 338 aaKnown RBP13.08□□□□□ -0.32
RTN3-207ENST00000536011 CLN3Q13286 438 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 LRP8Q14114 963 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 SLC18A3Q16572 532 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 ANKRD20A8PQ5CZ79 823 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 PHF19Q5T6S3 580 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 TMEM164Q5U3C3 297 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 INO80CQ6PI98 192 aaPredicted RBP13.08□□□□□ -0.32
RTN3-207ENST00000536011 SLC30A9Q6PML9 568 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 NYAP1Q6ZVC0 841 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 ZNF438Q7Z4V0 828 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 TSPAN33Q86UF1 283 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 NLRP8Q86W28 1048 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 PELI3Q8N2H9 469 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 CCL4L1Q8NHW4 92 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 PIH1D2Q8WWB5 315 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 OR2M4Q96R27 311 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 CCNL2Q96S94 520 aaPredicted RBP13.08□□□□□ -0.32
RTN3-207ENST00000536011 RBM22Q9NW64 420 aaKnown RBP eCLIP13.08□□□□□ -0.32
RTN3-207ENST00000536011 SEPT10Q9P0V9 454 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 PISDQ9UG56 409 aa13.08□□□□□ -0.32
RTN3-207ENST00000536011 HELZ2Q9BYK8 2649 aaKnown RBP13.08□□□□□ -0.32
RTN3-207ENST00000536011 PMS2P1A4D2B8 440 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 CASC3O15234 703 aaKnown RBP13.07□□□□□ -0.32
RTN3-207ENST00000536011 FGF1P05230 155 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 LIPCP11150 499 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 CD82P27701 267 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 ADCY8P40145 1251 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 ARSEP51690 589 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 CFHR1Q03591 330 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 NR1D2Q14995 579 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 ZSCAN23Q3MJ62 389 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 DOK6Q6PKX4 331 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 TECPR1Q7Z6L1 1165 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 C17orf82Q86X59 251 aaPredicted RBP13.07□□□□□ -0.32
RTN3-207ENST00000536011 GALNT13Q8IUC8 556 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 CCNYQ8ND76 341 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 CCDC112Q8NEF3 446 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 EXD1Q8NHP7 514 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 HDAC11Q96DB2 347 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 DPYSL5Q9BPU6 564 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 TDRD1Q9BXT4 1180 aaKnown RBP13.07□□□□□ -0.32
RTN3-207ENST00000536011 ADGRE3Q9BY15 652 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 B3GNT4Q9C0J1 378 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 ABCG8Q9H221 673 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 SPATS2LQ9NUQ6 558 aaKnown RBP13.07□□□□□ -0.32
RTN3-207ENST00000536011 WDR70Q9NW82 654 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 PCDHB11Q9Y5F2 797 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 KIF26BQ2KJY2 2108 aa13.07□□□□□ -0.32
RTN3-207ENST00000536011 ZNF487B1APH4 448 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 HGSO14964 777 aaPredicted RBP13.06□□□□□ -0.32
RTN3-207ENST00000536011 ECEL1O95672 775 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 PRB1P04280 392 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 PDHA1P08559 390 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 TMEM253P0C7T8 217 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 ALDH4A1P30038 563 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 ACTR1BP42025 376 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 STC1P52823 247 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 MAZP56270 477 aaKnown RBP13.06□□□□□ -0.32
RTN3-207ENST00000536011 ACTR1AP61163 376 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 B4GALNT1Q00973 533 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 CTBSQ01459 385 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 DSC2Q02487 901 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 TRA2AQ13595 282 aaKnown RBP eCLIP13.06□□□□□ -0.323e-6■□□□□ 8.6
RTN3-207ENST00000536011 AMZ1Q400G9 498 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 ODF2Q5BJF6 829 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 NRROSQ86YC3 692 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 SLITRK4Q8IW52 837 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 CCDC13Q8IYE1 715 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.06□□□□□ -0.32
RTN3-207ENST00000536011 OR8K1Q8NGG5 319 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 CCHCR1Q8TD31 782 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.06□□□□□ -0.32
RTN3-207ENST00000536011 FAF2Q96CS3 445 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 SCARF2Q96GP6 870 aaPredicted RBP13.06□□□□□ -0.32
RTN3-207ENST00000536011 ZMYND15Q9H091 742 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 STN1Q9H668 368 aaKnown RBP13.06□□□□□ -0.32
RTN3-207ENST00000536011 PCDH9Q9HC56 1237 aa13.06□□□□□ -0.32
RTN3-207ENST00000536011 VPS18Q9P253 973 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms