RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 SLC17A4Q9Y2C5 497 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 TMEM98Q9Y2Y6 226 aa14.69□□□□□ -0.06
VPS28-215ENST00000531924 MATN3O15232 486 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 B4GAT1O43505 415 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 MFSD11O43934 449 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 IVLP07476 585 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 PDHA1P08559 390 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 KRT7P08729 469 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 CD48P09326 243 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 LIPCP11150 499 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 ZNF30P17039 623 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 ITIH1P19827 911 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 MX2P20592 715 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 GPR3P46089 330 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 B4GALNT1Q00973 533 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 GALNT2Q10471 571 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 DPYSL3Q14195 570 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 PDK2Q15119 407 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 PTPRRQ15256 657 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 TGIF1Q15583 401 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 CLPPQ16740 277 aaPredicted RBP14.68□□□□□ -0.06
VPS28-215ENST00000531924 ANKRD20A8PQ5CZ79 823 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 ADAMTSL4Q6UY14 1074 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 MARK2Q7KZI7 788 aaKnown RBP14.68□□□□□ -0.06
VPS28-215ENST00000531924 TECPR1Q7Z6L1 1165 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 NRROSQ86YC3 692 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 GALNT13Q8IUC8 556 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 CBARPQ8N350 705 aaPredicted RBP14.68□□□□□ -0.06
VPS28-215ENST00000531924 CCNYQ8ND76 341 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 CCDC112Q8NEF3 446 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 PIH1D2Q8WWB5 315 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 CTNNBL1Q8WYA6 563 aaPredicted RBP14.68□□□□□ -0.06
VPS28-215ENST00000531924 OR2M4Q96R27 311 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 ARHGAP9Q9BRR9 750 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 ABCG8Q9H221 673 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 SEMA6CQ9H3T2 930 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 LCMT1Q9UIC8 334 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 SSUH2Q9Y2M2 353 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 PPIL1Q9Y3C6 166 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 LRRK1Q38SD2 2015 aa14.68□□□□□ -0.06
VPS28-215ENST00000531924 PRAMEF33A0A0G2JMD5 474 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 A0A0J9YYE9 177 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 INPP4BO15327 924 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 PRAMEF10O60809 474 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 PROSCO94903 275 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 MAP3K6O95382 1288 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 TRBC1P01850 177 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 PLA2G2AP14555 144 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 IL4RP24394 825 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 CCNCP24863 283 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 DSC2Q02487 901 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 PAFAH1B3Q15102 231 aaKnown RBP14.67□□□□□ -0.06
VPS28-215ENST00000531924 ZNF765Q7L2R6 523 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 SLITRK4Q8IW52 837 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 NRSN1Q8IZ57 195 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 LPCAT1Q8NF37 534 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 EXD1Q8NHP7 514 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 TTC9Q92623 222 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 SCAMP4Q969E2 229 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 SGF29Q96ES7 293 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 MED8Q96G25 268 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 AHCYL2Q96HN2 611 aaKnown RBP14.67□□□□□ -0.06
VPS28-215ENST00000531924 ZNF670Q9BS34 389 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 FUCA2Q9BTY2 467 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 DEF6Q9H4E7 631 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 KCNK4Q9NYG8 393 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 IFNKQ9P0W0 207 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 UVRAGQ9P2Y5 699 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 AMACRQ9UHK6 382 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 ZNHIT2Q9UHR6 403 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 ACSL6Q9UKU0 697 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 CHKBQ9Y259 395 aa14.67□□□□□ -0.06
VPS28-215ENST00000531924 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.67□□□□□ -0.065e-9■■■□□ 15.2
VPS28-215ENST00000531924 A0A0U1RQS6 177 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 FZD6O60353 706 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 FUCA1P04066 466 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 H2AFZP0C0S5 128 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 CD82P27701 267 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 CSTF2P33240 577 aaKnown RBP eCLIP14.66□□□□□ -0.06
VPS28-215ENST00000531924 PBX1P40424 430 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 RPL26P61254 145 aaKnown RBP14.66□□□□□ -0.06
VPS28-215ENST00000531924 PTSQ03393 145 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 LRP8Q14114 963 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 C16orf72Q14CZ0 275 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 ATP13A4Q4VNC1 1196 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 ODF2Q5BJF6 829 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 NCBP2-AS2Q69YL0 99 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 RFLNAQ6ZTI6 216 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 H2AFVQ71UI9 128 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 ZNF438Q7Z4V0 828 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 TRIM74Q86UV6 250 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 NLRP8Q86W28 1048 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 C17orf82Q86X59 251 aaPredicted RBP14.66□□□□□ -0.06
VPS28-215ENST00000531924 ZFAND4Q86XD8 727 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 FAM71BQ8TC56 605 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 CCHCR1Q8TD31 782 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 PTCD2Q8WV60 388 aaKnown RBP14.66□□□□□ -0.06
VPS28-215ENST00000531924 MAML1Q92585 1016 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 TSGA13Q96PP4 275 aa14.66□□□□□ -0.06
VPS28-215ENST00000531924 DPYSL5Q9BPU6 564 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms