RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CAB39LQ9H9S4 337 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 DYRK4Q9NR20 520 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 INTS10Q9NVR2 710 aaKnown RBP20.97■□□□□ 0.95
VPS28-208ENST00000527797 SAT1P21673 171 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 DRD1P21728 446 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 SPAM1P38567 509 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 NEK3P51956 506 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 POU4F1Q01851 419 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 TMEM196Q5HYL7 178 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 SDE2Q6IQ49 451 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 DPPA4Q7L190 304 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 TAS2R42Q7RTR8 314 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 CMC1Q7Z7K0 106 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 MMAAQ8IVH4 418 aaKnown RBP20.96■□□□□ 0.95
VPS28-208ENST00000527797 PNPLA1Q8N8W4 532 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 ACVR1CQ8NER5 493 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.96■□□□□ 0.95
VPS28-208ENST00000527797 ARRDC3Q96B67 414 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 VPS9D1Q9Y2B5 631 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 TICRRQ7Z2Z1 1910 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 GLYATL1P3A0A0U1RQE8 302 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 SYNCRIPO60506 623 aaKnown RBP20.96■□□□□ 0.95
VPS28-208ENST00000527797 NDUFS3O75489 264 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 SRP72O76094 671 aaKnown RBP20.96■□□□□ 0.95
VPS28-208ENST00000527797 EGFP01133 1207 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 PRSS56P0CW18 603 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 CHRM1P11229 460 aaPredicted RBP20.96■□□□□ 0.95
VPS28-208ENST00000527797 CRHR1P34998 444 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 TTPAP49638 278 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 SLC12A2P55011 1212 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 PDE1CQ14123 709 aaPredicted RBP20.96■□□□□ 0.95
VPS28-208ENST00000527797 LRRC14Q15048 493 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 RNF187Q5TA31 235 aaPredicted RBP20.96■□□□□ 0.95
VPS28-208ENST00000527797 FAM46CQ5VWP2 391 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 PSAPL1Q6NUJ1 521 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 FBXL19Q6PCT2 694 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 FAM151BQ6UXP7 276 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 SLC41A1Q8IVJ1 513 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 DYDC1Q8WWB3 177 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 VPS11Q9H270 941 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 FAM96AQ9H5X1 160 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 MLXIPLQ9NP71 852 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 IL26Q9NPH9 171 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 PKD2L2Q9NZM6 624 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 DCDC2Q9UHG0 476 aa20.96■□□□□ 0.95
VPS28-208ENST00000527797 CORO1CQ9ULV4 474 aaPredicted RBP20.96■□□□□ 0.95
VPS28-208ENST00000527797 BRWD1Q9NSI6 2320 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 A0A096LPK6 155 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 NARSO43776 548 aaKnown RBP20.95■□□□□ 0.94
VPS28-208ENST00000527797 PRAMEF1O95521 474 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 C1SP09871 688 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 ITGALP20701 1170 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 CDKN1CP49918 316 aaPredicted RBP20.95■□□□□ 0.94
VPS28-208ENST00000527797 SUOXP51687 545 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 METAP1P53582 386 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 CAMK2GQ13555 558 aaPredicted RBP20.95■□□□□ 0.94
VPS28-208ENST00000527797 TDGQ13569 410 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 ATXN2LQ8WWM7 1075 aaKnown RBP20.95■□□□□ 0.94
VPS28-208ENST00000527797 MSANTD3Q96H12 275 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 OMDQ99983 421 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 PSD3Q9NYI0 1048 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 TLK1Q9UKI8 766 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 CRYL1Q9Y2S2 319 aa20.95■□□□□ 0.94
VPS28-208ENST00000527797 SHOX2O60902 331 aaPredicted RBP20.94■□□□□ 0.94
VPS28-208ENST00000527797 RNASEH1O60930 286 aaKnown RBP20.94■□□□□ 0.94
VPS28-208ENST00000527797 STMN1P16949 149 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 NTSR1P30989 418 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 PPARGP37231 505 aaPredicted RBP20.94■□□□□ 0.94
VPS28-208ENST00000527797 PSMD8P48556 350 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 C2orf27AQ580R0 203 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 PPM1JQ5JR12 505 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 HHATQ5VTY9 493 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 CERS6Q6ZMG9 384 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 RAPH1Q70E73 1250 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 SNX20Q7Z614 316 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 TAX1BP1Q86VP1 789 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 PIANPQ8IYJ0 282 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 GPR26Q8NDV2 337 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 ERLEC1Q96DZ1 483 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 NDNQ99608 321 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 PAIP2Q9BPZ3 127 aaKnown RBP20.94■□□□□ 0.94
VPS28-208ENST00000527797 ASB8Q9H765 288 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 SLC2A4RGQ9NR83 387 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 SLC17A7Q9P2U7 560 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 VWA7Q9Y334 891 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 PLLPQ9Y342 182 aa20.94■□□□□ 0.94
VPS28-208ENST00000527797 GAPDHSO14556 408 aaPredicted RBP20.93■□□□□ 0.94
VPS28-208ENST00000527797 GLRA3O75311 464 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 C2P06681 752 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 SRFP11831 508 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 CRABP2P29373 138 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 MMP12P39900 470 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 SPINT3P49223 89 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 WDR4P57081 412 aaKnown RBP20.93■□□□□ 0.94
VPS28-208ENST00000527797 RAB10P61026 200 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 IL9RQ01113 521 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 GABPB1Q06547 395 aaPredicted RBP20.93■□□□□ 0.94
VPS28-208ENST00000527797 ELP6Q0PNE2 266 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 RALGDSQ12967 914 aa20.93■□□□□ 0.94
VPS28-208ENST00000527797 TAF1BQ53T94 588 aaPredicted RBP20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms