RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 AGAP2Q99490 1192 aa13.68□□□□□ -0.22
CD44-224ENST00000526669 RIOK2Q9BVS4 552 aaKnown RBP13.68□□□□□ -0.22
CD44-224ENST00000526669 C1QTNF2Q9BXJ5 285 aa13.68□□□□□ -0.22
CD44-224ENST00000526669 FRMD8Q9BZ67 464 aaPredicted RBP13.68□□□□□ -0.22
CD44-224ENST00000526669 SUDS3Q9H7L9 328 aaPredicted RBP13.68□□□□□ -0.22
CD44-224ENST00000526669 FAM86C1Q9NVL1 165 aa13.68□□□□□ -0.22
CD44-224ENST00000526669 IL1RAPL1Q9NZN1 696 aa13.68□□□□□ -0.22
CD44-224ENST00000526669 MTRF1LQ9UGC7 380 aaKnown RBP13.68□□□□□ -0.22
CD44-224ENST00000526669 USP34Q70CQ2 3546 aa13.68□□□□□ -0.22
CD44-224ENST00000526669 MROH6A6NGR9 719 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 OR51F1A6NGY5 319 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 C10orf142B7Z368 130 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 H0Y8X5 98 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 K7ESM1 405 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 GPR39O43194 453 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 LATO43561 262 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 PRSS56P0CW18 603 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 HNRNPA2B1P22626 353 aaKnown RBP13.67□□□□□ -0.22
CD44-224ENST00000526669 ITPKAP23677 461 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 CNR2P34972 360 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 SPAM1P38567 509 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 VSNL1P62760 191 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 CUL1Q13616 776 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 LRRC14Q15048 493 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 ELF2Q15723 593 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 WSCD2Q2TBF2 565 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 RAET1GQ6H3X3 334 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 CENPUQ71F23 418 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 ZBED8Q8IZ13 594 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 FBXO36Q8NEA4 188 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 CADM4Q8NFZ8 388 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 FOXJ1Q92949 421 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 AP2M1Q96CW1 435 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 SERAC1Q96JX3 654 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 TBATAQ96M53 351 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 SLC6A18Q96N87 628 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 FMO2Q99518 471 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 SPATA16Q9BXB7 569 aa13.67□□□□□ -0.22
CD44-224ENST00000526669 NLE1Q9NVX2 485 aaPredicted RBP13.67□□□□□ -0.22
CD44-224ENST00000526669 GPR179Q6PRD1 2367 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 A0A1W2PPC4 97 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 E7ESA3 106 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 RHOBTB1O94844 696 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 AKT2P31751 481 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 MC4RP32245 332 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 GPR1P46091 355 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 PDE1BQ01064 536 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 CHRNA6Q15825 494 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 LYSMD4Q5XG99 296 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 LAYNQ6UX15 382 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 GCNT7Q6ZNI0 430 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 PTAR1Q7Z6K3 402 aaPredicted RBP13.66□□□□□ -0.22
CD44-224ENST00000526669 C11orf74Q86VG3 221 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 NRSN1Q8IZ57 195 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 OR13J1Q8NGT2 312 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 HDAC10Q969S8 669 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 C9orf72Q96LT7 481 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 FCRL3Q96P31 734 aaPredicted RBP13.66□□□□□ -0.22
CD44-224ENST00000526669 KLF6Q99612 283 aaPredicted RBP13.66□□□□□ -0.22
CD44-224ENST00000526669 EBNA1BP2Q99848 306 aaKnown RBP13.66□□□□□ -0.22
CD44-224ENST00000526669 ORAI3Q9BRQ5 295 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 KIFC1Q9BW19 673 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 PCED1AQ9H1Q7 454 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 FAM83DQ9H4H8 585 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 FAM96AQ9H5X1 160 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 MRM3Q9HC36 420 aaKnown RBP13.66□□□□□ -0.22
CD44-224ENST00000526669 ARFGAP3Q9NP61 516 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 AASDHPPTQ9NRN7 309 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.66□□□□□ -0.22
CD44-224ENST00000526669 TEX264Q9Y6I9 313 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 RPS6KL1Q9Y6S9 549 aa13.66□□□□□ -0.22
CD44-224ENST00000526669 GLYATL1P3A0A0U1RQE8 302 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 FAM237BA0A1B0GVD1 139 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 CCDC162PA2VCL2 907 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 POM121BA6NF01 834 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 FADS2P1A8MWK0 482 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 GOLGA8KD6RF30 607 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 GOLGA8TH3BQL2 631 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 GAPDHSO14556 408 aaPredicted RBP13.65□□□□□ -0.22
CD44-224ENST00000526669 INPP4BO15327 924 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 EIF3HO15372 352 aaKnown RBP eCLIP13.65□□□□□ -0.22
CD44-224ENST00000526669 UGT1A9O60656 530 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 FAM153BP0C7A2 387 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 PGAM1P18669 254 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 UGT1A6P19224 532 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 UGT1A1P22309 533 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 UGT1A4P22310 534 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 CD27P26842 260 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 CA5AP35218 305 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 UGT1A3P35503 534 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 UGT1A5P35504 534 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 PRAMEP78395 509 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 XIAPP98170 497 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 CREB5Q02930 508 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 PEX6Q13608 980 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 LAMB3Q13751 1172 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 SKIDA1Q1XH10 827 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 FAM153CQ494X1 144 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 ANKRD20A4Q4UJ75 823 aa13.65□□□□□ -0.22
CD44-224ENST00000526669 ZRANB3Q5FWF4 1079 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms