RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	KRT81	Q14533	505 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	CCNG2	Q16589	344 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	MZT2B	Q6NZ67	158 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	DSTYK	Q6XUX3	929 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	C1orf122	Q6ZSJ8	110 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	GSTA5	Q7RTV2	222 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	R3HCC1L	Q7Z5L2	792 aa	Known RBP	4.64	□□□□□ -1.67
CD44-223	ENST00000526553	HAPLN4	Q86UW8	402 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	POC1A	Q8NBT0	407 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	KCNH5	Q8NCM2	988 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	RFFL	Q8WZ73	363 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	FAM149B1	Q96BN6	582 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	PIP5K1A	Q99755	562 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	TMX4	Q9H1E5	349 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-223	ENST00000526553	PCDHB16	Q9NRJ7	776 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	CGNL1	Q0VF96	1302 aa		4.64	□□□□□ -1.67
CD44-223	ENST00000526553	TCF20	Q9UGU0	1960 aa	Known RBP	4.64	□□□□□ -1.67
CD44-223	ENST00000526553		B4E171	279 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	EIF3CL	B5ME19	914 aa	Known RBP	4.63	□□□□□ -1.67
CD44-223	ENST00000526553	PAGE4	O60829	102 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	TMEM63A	O94886	807 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	ATP1A3	P13637	1013 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	DGKA	P23743	735 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	BDKRB2	P30411	391 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	TSPAN7	P41732	249 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	FASLG	P48023	281 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	RARS	P54136	660 aa	Known RBP	4.63	□□□□□ -1.67
CD44-223	ENST00000526553	OLR1	P78380	273 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	PDE1C	Q14123	709 aa	Predicted RBP	4.63	□□□□□ -1.67
CD44-223	ENST00000526553	FRG2	Q64ET8	278 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	RGMB	Q6NW40	437 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	ATF7IP	Q6VMQ6	1270 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	C4orf50	Q6ZRC1	276 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	SATL1	Q86VE3	508 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	OR2AK2	Q8NG84	335 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	SPATA20	Q8TB22	786 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	MAP7D2	Q96T17	732 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	C1QTNF5	Q9BXJ0	243 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	PDCL3	Q9H2J4	239 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	KIF9	Q9HAQ2	790 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	MKLN1	Q9UL63	735 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	AMDHD2	Q9Y303	409 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553	PSAT1	Q9Y617	370 aa		4.63	□□□□□ -1.67
CD44-223	ENST00000526553		F5H0A9	414 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-223	ENST00000526553	BMPR1B	O00238	502 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	VCY	O14598	125 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	TGFB1I1	O43294	461 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	DDX58	O95786	925 aa	Known RBP	4.62	□□□□□ -1.67
CD44-223	ENST00000526553	CD4	P01730	458 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	LDHC	P07864	332 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	ZNF182	P17025	639 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-223	ENST00000526553	AMD1	P17707	334 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	S1PR1	P21453	382 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	ICAM3	P32942	547 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	BSG	P35613	385 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	USP8	P40818	1118 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	TMPO	P42166	694 aa	Known RBP	4.62	□□□□□ -1.67
CD44-223	ENST00000526553	CSNK2A1	P68400	391 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-223	ENST00000526553	DPCR1	Q3MIW9	517 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	CXorf66	Q5JRM2	361 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-223	ENST00000526553	KCNT1	Q5JUK3	1230 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	SIGIRR	Q6IA17	410 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553		Q6ZTC4	211 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	C9orf139	Q6ZV77	190 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	ZNF771	Q7L3S4	317 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-223	ENST00000526553	CACNA2D4	Q7Z3S7	1137 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	CNTROB	Q8N137	903 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	CSNK2A3	Q8NEV1	391 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	DNASE2B	Q8WZ79	361 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	FEM1C	Q96JP0	617 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	PPP1R13B	Q96KQ4	1090 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	SCPEP1	Q9HB40	452 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	LTB4R2	Q9NPC1	389 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	SMC4	Q9NTJ3	1288 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	TMEM30A	Q9NV96	361 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	DONSON	Q9NYP3	566 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	PCDHAC2	Q9Y5I4	1007 aa		4.62	□□□□□ -1.67
CD44-223	ENST00000526553	CAPN3	P20807	821 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	HOXC9	P31274	260 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	CCR9	P51686	369 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	REL	Q04864	619 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-223	ENST00000526553	SLC20A2	Q08357	652 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	TMEM115	Q12893	351 aa	Predicted RBP	4.61	□□□□□ -1.67
CD44-223	ENST00000526553	TRNP1	Q6NT89	227 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	FAM180B	Q6P0A1	224 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	TSSK4	Q6SA08	328 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	GFRAL	Q6UXV0	394 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	FOXL2NB	Q6ZUU3	175 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	DPPA4	Q7L190	304 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	DIS3L2	Q8IYB7	885 aa	Known RBP	4.61	□□□□□ -1.67
CD44-223	ENST00000526553	C1orf87	Q8N0U7	546 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	PCDH20	Q8N6Y1	951 aa	Known RBP	4.61	□□□□□ -1.67
CD44-223	ENST00000526553	ETNPPL	Q8TBG4	499 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	SNRNP27	Q8WVK2	155 aa	Known RBP	4.61	□□□□□ -1.67
CD44-223	ENST00000526553	SMARCE1	Q969G3	411 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	INTS12	Q96CB8	462 aa	Known RBP	4.61	□□□□□ -1.67
CD44-223	ENST00000526553	HES6	Q96HZ4	224 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	HARBI1	Q96MB7	349 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	TMEM68	Q96MH6	324 aa		4.61	□□□□□ -1.67
CD44-223	ENST00000526553	TTC14	Q96N46	770 aa		4.61	□□□□□ -1.67

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