RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 NTPCRQ9BSD7 190 aaKnown RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 CDK19Q9BWU1 502 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 NT5C3AQ9H0P0 336 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 SLC32A1Q9H598 525 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 COPS7BQ9H9Q2 264 aaPredicted RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 ENTPD7Q9NQZ7 604 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 PCDHB16Q9NRJ7 776 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 NLKQ9UBE8 527 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 EXTL2Q9UBQ6 330 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 IPO11Q9UI26 975 aaKnown RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 HPCAL4Q9UM19 191 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 KIF1AQ12756 1690 aa4.88□□□□□ -1.63
CD44-220ENST00000525688 RGPD8O14715 1765 aaPredicted RBP4.88□□□□□ -1.63
CD44-220ENST00000525688 COL22A1Q8NFW1 1626 aaPredicted RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 QRICH2Q9H0J4 1663 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 ARHGAP10A1A4S6 786 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 KRT87PA6NCN2 255 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 CXorf65A6NEN9 183 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 PTGES3LE9PB15 166 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 LDLRAD4O15165 306 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 VILLO15195 856 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 NEURL1O76050 574 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 AFPP02771 609 aaKnown RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 WNT1P04628 370 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 GALTP07902 379 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 CD63P08962 238 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 PTPN2P17706 415 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 EEF1DP29692 281 aaKnown RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 FMO4P31512 558 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 RRP1P56182 461 aaKnown RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 YBEYP58557 167 aaPredicted RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 YPEL5P62699 121 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 DDR1Q08345 913 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 GALNT3Q14435 633 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 PGM5Q15124 567 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 CEP55Q53EZ4 464 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 TBC1D9BQ66K14 1250 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 SLC2A7Q6PXP3 512 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 KLHL24Q6TFL4 600 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 DENND5BQ6ZUT9 1274 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 GLRX5Q86SX6 157 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 TADA2BQ86TJ2 420 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 DNAAF1Q8NEP3 725 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 OR52K2Q8NGK3 314 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 CTCFLQ8NI51 663 aaPredicted RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 OSR1Q8TAX0 266 aaPredicted RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 NEK9Q8TD19 979 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 GRK7Q8WTQ7 553 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 DEPDC1BQ8WUY9 529 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 KAT2AQ92830 837 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 ZNF830Q96NB3 372 aaPredicted RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 FAM210AQ96ND0 272 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 PIP5K1AQ99755 562 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 IFT27Q9BW83 186 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 MOV10Q9HCE1 1003 aaKnown RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 AIPL1Q9NZN9 384 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 NCKIPSDQ9NZQ3 722 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 C6orf203Q9P0P8 240 aaPredicted RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 KIAA1456Q9P272 454 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.87□□□□□ -1.63
CD44-220ENST00000525688 LYVE1Q9Y5Y7 322 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 SBNO1A3KN83 1393 aa4.87□□□□□ -1.63
CD44-220ENST00000525688 POLR3AO14802 1390 aaPredicted RBP4.87□□□□□ -1.63
CD44-220ENST00000525688 CYP2D7A0A087X1C5 515 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 TARSL2A2RTX5 802 aaKnown RBP4.86□□□□□ -1.63
CD44-220ENST00000525688 A8MXE2 369 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 KINO60870 393 aaKnown RBP4.86□□□□□ -1.63
CD44-220ENST00000525688 TACC1O75410 805 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 CSPG5O95196 566 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 CBX6O95503 412 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 NFATC1O95644 943 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 IGLV2-14P01704 120 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 HEXBP07686 556 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 SPARCP09486 303 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 ZNF8P17098 575 aaPredicted RBP4.86□□□□□ -1.63
CD44-220ENST00000525688 CDH2P19022 906 aaPredicted RBP4.86□□□□□ -1.63
CD44-220ENST00000525688 TM4SF1P30408 202 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 TLX1P31314 330 aaPredicted RBP4.86□□□□□ -1.63
CD44-220ENST00000525688 PSMC4P43686 418 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 MXI1P50539 228 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 ARFIP1P53367 373 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 SLC12A3P55017 1021 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 YWHAZP63104 245 aaKnown RBP4.86□□□□□ -1.63
CD44-220ENST00000525688 COASYQ13057 564 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 GSTA3Q16772 222 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 TCP11X2Q5H9J9 407 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 SERTAD4-AS1Q5TG53 156 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 ATG9BQ674R7 924 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 CDC73Q6P1J9 531 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 LRIG3Q6UXM1 1119 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 PLEKHM3Q6ZWE6 761 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 FAM160B2Q86V87 743 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 WDR5BQ86VZ2 330 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 CNTROBQ8N137 903 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 C10orf53Q8N6V4 93 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 DENND6BQ8NEG7 585 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 ANKRD20A12PQ8NF67 263 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 WIPF2Q8TF74 440 aaPredicted RBP4.86□□□□□ -1.63
CD44-220ENST00000525688 ANKRD49Q8WVL7 239 aa4.86□□□□□ -1.63
CD44-220ENST00000525688 CTNNBL1Q8WYA6 563 aaPredicted RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms