RNA–Protein interactions for RNA: ENST00000515711.1

LMNA-224, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-224	ENST00000515711	HCAR2	Q8TDS4	363 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	AARSD1	Q9BTE6	412 aa	Known RBP	11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	SUV39H2	Q9H5I1	410 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	ZDHHC6	Q9H6R6	413 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	ZFYVE1	Q9HBF4	777 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	SLCO1B3	Q9NPD5	702 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	THAP1	Q9NVV9	213 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	LMCD1	Q9NZU5	365 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	MARCH4	Q9P2E8	410 aa	Predicted RBP	11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	VWA7	Q9Y334	891 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	SLC30A1	Q9Y6M5	507 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	USH1C	Q9Y6N9	552 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	PLXNA2	O75051	1894 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	C5orf42	Q9H799	3197 aa		11.93	□□□□□ -0.5
LMNA-224	ENST00000515711	PLXNB3	Q9ULL4	1909 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	C1orf232	A0A0U1RR37	186 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	CCDC189	A1A4V9	331 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	TSPAN11	A1L157	253 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	TMEM114	B3SHH9	223 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	CCL22	O00626	93 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	AURKA	O14965	403 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	PHGDH	O43175	533 aa	Known RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	BUD23	O43709	281 aa	Known RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	NDUFS3	O75489	264 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	DCTN3	O75935	186 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	RBP1	P09455	135 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	LTA4H	P09960	611 aa	Known RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	ZNF30	P17039	623 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	ITGAL	P20701	1170 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	CD9	P21926	228 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	FDXR	P22570	491 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	FCAR	P24071	287 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	IRF9	Q00978	393 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	OCRL	Q01968	901 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	FCHO2	Q0JRZ9	810 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	GEN1	Q17RS7	908 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	ATAT1	Q5SQI0	421 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	RBM20	Q5T481	1227 aa	Known RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	C16orf46	Q6P387	395 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	SYCE2	Q6PIF2	218 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	DPY19L3	Q6ZPD9	716 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	TPRG1	Q6ZUI0	275 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	CCDC121	Q6ZUS5	278 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711		Q6ZVU0	165 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	CRLF3	Q8IUI8	442 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	MFSD6L	Q8IWD5	586 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	YAF2	Q8IY57	180 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	CENPL	Q8N0S6	344 aa	Predicted RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	PLD6	Q8N2A8	252 aa	Known RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	ACVR1C	Q8NER5	493 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	PPP4R1	Q8TF05	950 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	LPGAT1	Q92604	370 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	RSPRY1	Q96DX4	576 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	CCDC126	Q96EE4	140 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	SCYL1	Q96KG9	808 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	RIPOR3	Q96MK2	946 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	MCCC1	Q96RQ3	725 aa	Predicted RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	MRPL57	Q9BQC6	102 aa	Known RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	HEPH	Q9BQS7	1158 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	MECR	Q9BV79	373 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	CIPC	Q9C0C6	399 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	MRPL46	Q9H2W6	279 aa	Known RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	UBE2Z	Q9H832	354 aa	Predicted RBP	11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	DEC1	Q9P2X7	70 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	FKBPL	Q9UIM3	349 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	PCDHB1	Q9Y5F3	818 aa		11.92	□□□□□ -0.5
LMNA-224	ENST00000515711	SNN	O75324	88 aa	Predicted RBP	11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	TULP3	O75386	442 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	TOP3B	O95985	862 aa	Known RBP	11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	PYGL	P06737	847 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	F7	P08709	466 aa	Predicted RBP	11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	ALPI	P09923	528 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	RALB	P11234	206 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	FGF3	P11487	239 aa	Predicted RBP	11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	CYP2A6	P11509	494 aa	Predicted RBP	11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	CTPS1	P17812	591 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	KCNA5	P22460	613 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	SPAM1	P38567	509 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	EIF2D	P41214	584 aa	Known RBP	11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	MTHFR	P42898	656 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	PTGER3	P43115	390 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	HK2	P52789	917 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	CCDC15	Q0P6D6	951 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	BST1	Q10588	318 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	PEX6	Q13608	980 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	ACAP2	Q15057	778 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	ZRANB3	Q5FWF4	1079 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	ZNF789	Q5FWF6	425 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	LIPM	Q5VYY2	423 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	TMEM215	Q68D42	235 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	UGT3A1	Q6NUS8	523 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	GDPD4	Q6W3E5	623 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	TRPM8	Q7Z2W7	1104 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	C10orf107	Q8IVU9	208 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	CEP97	Q8IW35	865 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	NAT16	Q8N8M0	369 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	FRS2	Q8WU20	508 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	UCMA	Q8WVF2	138 aa		11.91	□□□□□ -0.5
LMNA-224	ENST00000515711	KCTD4	Q8WVF5	259 aa		11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms