RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 IFNA2P01563 188 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 TFEBP19484 476 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 MAGP20916 626 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 PDHA2P29803 388 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 ALDH4A1P30038 563 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 CEBPGP53567 150 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 LIMK2P53671 638 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 VAMP2P63027 116 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 TAPT1Q6NXT6 567 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 BBS12Q6ZW61 710 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 GLT6D1Q7Z4J2 308 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 TDRPQ86YL5 185 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 OR5K1Q8NHB7 308 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 HEXDCQ8WVB3 486 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF606Q8WXB4 792 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 FBXO32Q969P5 355 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 ZSCAN5AQ9BUG6 496 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 PLA2G12BQ9BX93 195 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 FETUBQ9UGM5 382 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 VPS28Q9UK41 221 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 RPH3AQ9Y2J0 694 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 PCDHGB2Q9Y5G2 931 aa11.21□□□□□ -0.62
LIMCH1-217ENST00000512946 BTBD19C9JJ37 291 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 TNFRSF11BO00300 401 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ENTPD3O75355 529 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 PPM1BO75688 479 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 HOXC6P09630 235 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 NUDT7P0C024 238 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 PRDX5P30044 214 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 GDI2P50395 445 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 PNLIPRP1P54315 467 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 GIT2Q14161 759 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 SYT16Q17RD7 645 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 AHSA2Q719I0 299 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF354BQ96LW1 612 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 COPS4Q9BT78 406 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 CPVLQ9H3G5 476 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 A0A087WZ62 844 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ENTPD6O75354 484 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 IGSF6O95976 241 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 IFNW1P05000 195 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 KDELR1P24390 212 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC7A1P30825 629 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 TAS2R41P59536 307 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 PLEKHN1Q494U1 663 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 PABPC1LQ4VXU2 614 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 TMEM53Q6P2H8 277 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 CHRDL2Q6WN34 429 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 GPR65Q8IYL9 337 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 PLEKHO2Q8TD55 490 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ACTR6Q9GZN1 396 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 MMP27Q9H306 513 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ALG9Q9H6U8 611 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 LGALS13Q9UHV8 139 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 BCS1LQ9Y276 419 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ATP10BO94823 1461 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 GCATO75600 419 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 HNRNPH3P31942 346 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ZNF311Q5JNZ3 666 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ATXN7L2Q5T6C5 722 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 OGFRL1Q5TC84 451 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 USP30Q70CQ3 517 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 TOMM5Q8N4H5 51 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 LINC00471Q8N535 108 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 NEK7Q8TDX7 302 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ASB15Q8WXK1 588 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 KAT2BQ92831 832 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 C1QTNF7Q9BXJ2 289 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ASB7Q9H672 318 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 DBNDD1Q9H9R9 158 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 PLA2G4CQ9UP65 541 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 PLLPQ9Y342 182 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 HSPB11Q9Y547 144 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 TRPV2Q9Y5S1 764 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 FAM205CA6NFA0 338 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 SSX4O60224 188 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 KERAO60938 352 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 MAGEA6P43360 314 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 BAG6P46379 1132 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ZCCHC12Q6PEW1 402 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 UNC5AQ6ZN44 842 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ATG9AQ7Z3C6 839 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 TRMT11Q7Z4G4 463 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 ECHDC2Q86YB7 292 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 FAM98AQ8NCA5 519 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 GLB1L3Q8NCI6 653 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 OR6J1Q8NGC5 347 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 TCEAL3Q969E4 200 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 PHOX2BQ99453 314 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 SLC39A1Q9NY26 324 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 MINPP1Q9UNW1 487 aa11.2□□□□□ -0.62
LIMCH1-217ENST00000512946 C2orf71A6NGG8 1288 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 DISC1C4P0D8 188 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 AZGP1P25311 298 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 MMP14P50281 582 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 RPL38P63173 70 aaKnown RBP11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 TPRG1LQ5T0D9 272 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 DCST1Q5T197 706 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 SV2AQ7L0J3 742 aa11.19□□□□□ -0.62
LIMCH1-217ENST00000512946 ADGRG6Q86SQ4 1221 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms