RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 IGLV3-27P01718 113 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 CYP17A1P05093 508 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 PABPC1P11940 636 aaKnown RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 BMP1P13497 986 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 IL9P15248 144 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 TIE1P35590 1138 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 MTHFRP42898 656 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 RENBPP51606 427 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 CHN2P52757 468 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 NKX2-5P52952 324 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 PKNOX1P55347 436 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 PTCRAQ6ISU1 281 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 SERPINA13PQ6UXR4 307 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 C3orf62Q6ZUJ4 267 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 PDIK1LQ8N165 341 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 LZTR1Q8N653 840 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 LPCAT1Q8NF37 534 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 ZFP28Q8NHY6 868 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 PPP4R1Q8TF05 950 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 TMIGD2Q96BF3 282 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 CLIP3Q96DZ5 547 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 C1orf74Q96LT6 269 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 HAUS8Q9BT25 410 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 C2orf49Q9BVC5 232 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 SCUBE2Q9NQ36 999 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 POLR3BQ9NW08 1133 aaPredicted RBP8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 ZNF212Q9UDV6 495 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 ANAPC1Q9H1A4 1944 aa8.69□□□□□ -1.02
LIMCH1-209ENST00000509277 C2CD4DB7Z1M9 353 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 NDC80O14777 642 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 MAFKO60675 156 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 COL6A2P12110 1019 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PSMC3P17980 439 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 ABCG1P45844 678 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 WASHC5Q12768 1159 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 TEX44Q53QW1 395 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 ASTLQ6HA08 431 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 HTR3DQ70Z44 454 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 DCLK2Q8N568 766 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CNTD1Q8N815 330 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CAPSLQ8WWF8 208 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CPT1BQ92523 772 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 OXNAD1Q96HP4 312 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PANX3Q96QZ0 392 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 ROPN1BQ9BZX4 212 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 ROPN1Q9HAT0 212 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PCDH12Q9NPG4 1184 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 SACM1LQ9NTJ5 587 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CACNA2D2Q9NY47 1150 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 KIAA1522Q9P206 1035 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 SLC25A13Q9UJS0 675 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 MAFFQ9ULX9 164 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 GOLGA8QA0A0J9YX86 632 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 GOLGA8OA6NCC3 632 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 TMEM247A6NEH6 219 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 GOLGA8NF8WBI6 632 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 KPNA3O00505 521 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 DNALI1O14645 258 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 WFS1O76024 890 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PIGNO95427 931 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 NFATC1O95644 943 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CDK4P11802 303 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 ENO3P13929 434 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 XPAP23025 273 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 DDX6P26196 483 aaKnown RBP eCLIP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 MGAT1P26572 445 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 RCVRNP35243 200 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 RGRP47804 291 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 GALNT2Q10471 571 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 SERINC3Q13530 473 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PTK6Q13882 451 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CHI3L2Q15782 390 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 ZNF77Q15935 545 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PLEKHG6Q3KR16 790 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 MBLAC2Q68D91 279 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 RETSATQ6NUM9 610 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PGBD3Q8N328 593 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 C10orf82Q8WW14 230 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 TSR3Q9UJK0 312 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 FBXL21Q9UKT6 434 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CA14Q9ULX7 337 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PCDHB9Q9Y5E1 797 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 RAD54BQ9Y620 910 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PATJQ8NI35 1801 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 DOCK8Q8NF50 2099 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 GRXCR2A6NFK2 248 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 DLG2Q15700 870 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CERCAMQ5T4B2 595 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CXorf57Q6NSI4 855 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 TIGD7Q6NT04 549 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 BNIPLQ7Z465 357 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 CAMK1DQ8IU85 385 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 SNX29P2Q8IUI4 249 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 PPIL6Q8IXY8 311 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 FAM156AQ8NDB6 213 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 EME1Q96AY2 570 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 ABCG8Q9H221 673 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 TBC1D23Q9NUY8 699 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 STARD13Q9Y3M8 1113 aa8.68□□□□□ -1.02
LIMCH1-209ENST00000509277 TCF20Q9UGU0 1960 aaKnown RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms